Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 110.66868 * 2 1 4 4 O 1.43772 * 110.74941 * 123.22366 * 2 1 3 5 5 C 1.36128 * 109.23634 * 146.10352 * 4 2 1 6 6 C 1.39285 * 129.89377 * 161.14019 * 5 4 2 7 7 C 1.37937 * 120.24056 * 179.17338 * 6 5 4 8 8 C 1.38287 * 120.34658 * 0.50480 * 7 6 5 9 9 C 1.38343 * 119.76992 * 359.65554 * 8 7 6 10 10 C 1.37743 * 119.97894 * 0.26079 * 9 8 7 11 11 C 1.51642 * 132.17076 * 179.07927 * 10 9 8 12 12 H 1.08999 * 110.93838 * 314.01255 * 11 10 9 13 13 C 1.50700 * 110.94344 * 77.69873 * 11 10 9 14 14 H 1.08000 * 120.00026 * 114.42352 * 13 11 10 15 15 C 1.37879 * 119.99849 * 294.43458 * 13 11 10 16 16 N 1.31517 * 120.00027 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 119.99999 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47225 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47235 * 119.99448 * 17 15 13 20 20 H 1.48501 * 109.47328 * 239.99460 * 17 15 13 21 21 H 1.08993 * 109.47292 * 305.93130 * 1 2 3 22 22 H 1.09011 * 109.46618 * 65.92652 * 1 2 3 23 23 H 1.08993 * 109.47162 * 185.92482 * 1 2 3 24 24 H 1.09008 * 109.47204 * 181.76434 * 3 2 1 25 25 H 1.09005 * 109.47542 * 301.76270 * 3 2 1 26 26 H 1.08996 * 109.47174 * 61.76535 * 3 2 1 27 27 H 1.07999 * 119.87912 * 359.42077 * 6 5 4 28 28 H 1.07999 * 119.82276 * 180.24469 * 7 6 5 29 29 H 1.07999 * 120.11010 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.00772 * 180.23575 * 9 8 7 31 31 H 0.96996 * 120.00057 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4315 0.0000 4 8 2.0393 -0.7366 1.1247 5 6 3.1959 -1.3590 0.7666 6 6 4.2147 -1.8776 1.5624 7 6 5.3056 -2.4905 0.9821 8 6 5.4031 -2.5866 -0.3940 9 6 4.3971 -2.0712 -1.1915 10 6 3.3059 -1.4602 -0.6141 11 6 2.0781 -0.7969 -1.2076 12 1 2.3526 -0.1281 -2.0233 13 6 1.0803 -1.8268 -1.6708 14 1 0.1190 -1.9043 -1.1846 15 6 1.3947 -2.6705 -2.7150 16 7 2.5652 -2.5760 -3.3072 17 14 0.1582 -3.9476 -3.2888 18 1 -1.0730 -3.8499 -2.4642 19 1 -0.1796 -3.7042 -4.7142 20 1 0.7443 -5.3043 -3.1436 21 1 -0.3633 0.6030 0.8321 22 1 -0.3633 0.4192 -0.9384 23 1 -0.3633 -1.0221 0.1061 24 1 3.1594 1.4089 -0.0316 25 1 1.6921 1.9625 -0.8738 26 1 1.7434 1.9430 0.9054 27 1 4.1483 -1.8030 2.6377 28 1 6.0898 -2.8938 1.6057 29 1 6.2592 -3.0670 -0.8443 30 1 4.4674 -2.1475 -2.2666 31 1 2.7863 -3.1692 -4.0421 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957088.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = -9.697987 kcal Electronic energy + Delta-G solvation = -15031.124868 eV Core-core repulsion = 12663.806950 eV Total energy + Delta-G solvation = -2367.317918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25952 -36.60609 -33.77241 -32.04295 -30.15001 -29.03094 -27.36754 -26.06278 -23.66713 -21.37462 -20.39299 -19.47071 -16.67833 -15.93374 -15.42649 -14.73387 -14.45380 -14.31061 -13.14005 -13.07506 -12.65983 -12.30149 -11.93903 -11.81730 -11.68925 -11.38635 -11.16484 -11.03215 -10.84592 -10.63147 -10.27007 -10.22106 -9.71100 -9.26460 -9.14069 -8.56418 -7.71726 -7.05196 -6.11509 -4.18371 2.40268 2.45707 3.24304 3.32798 3.35945 4.22880 4.34090 4.83647 5.19342 5.59219 5.69066 5.73424 5.79072 5.93230 6.02131 6.19283 6.31850 6.32733 6.42213 6.58153 6.60570 6.63808 6.85502 6.97600 7.19485 7.29921 7.40168 7.53573 7.74847 7.85114 7.92319 8.14778 8.33404 8.82420 9.46152 10.93539 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.014663 C = 0.010521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.620597 B = 1909.108046 C = 2660.794010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.096 3.904 3 C -0.156 4.156 4 O -0.308 6.308 5 C 0.085 3.915 6 C -0.162 4.162 7 C -0.117 4.117 8 C -0.171 4.171 9 C -0.055 4.055 10 C -0.104 4.104 11 C 0.067 3.933 12 H 0.051 0.949 13 C -0.511 4.511 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.881 5.881 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 3.329 4.273 5.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 C -0.213 4.213 4 O -0.223 6.223 5 C 0.040 3.960 6 C -0.181 4.181 7 C -0.135 4.135 8 C -0.189 4.189 9 C -0.074 4.074 10 C -0.105 4.105 11 C 0.048 3.952 12 H 0.069 0.931 13 C -0.549 4.549 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.519 5.519 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.449 3.266 4.328 5.612 hybrid contribution -0.465 -0.926 -0.439 1.125 sum 0.984 2.340 3.890 4.645 Atomic orbital electron populations 1.21723 0.92570 1.02873 1.00840 1.22813 0.94929 0.90492 0.85939 1.22147 1.01365 0.96242 1.01585 1.86706 1.34690 1.62322 1.38592 1.19667 0.87015 0.95443 0.93859 1.19941 0.93722 1.06143 0.98257 1.20512 0.97236 1.00831 0.94946 1.21000 1.00074 1.04309 0.93538 1.20900 0.90982 0.93849 1.01638 1.21384 0.95992 1.00546 0.92598 1.19060 0.90100 0.94030 0.91977 0.93139 1.21248 1.00508 1.17271 1.15831 0.90800 1.24978 0.95366 0.97192 0.96112 1.69859 1.20623 1.38345 1.23061 0.86475 0.81413 0.81369 0.78455 1.19643 1.20912 1.20968 0.94145 0.90862 0.90763 0.92648 0.91343 0.92830 0.87400 0.87119 0.87348 0.83730 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 7.89 37.16 0.29 -2.06 16 2 C 0.10 2.04 1.16 -89.72 -0.10 1.94 16 3 C -0.16 -2.80 8.86 37.16 0.33 -2.47 16 4 O -0.31 -7.12 10.52 -20.15 -0.21 -7.33 16 5 C 0.09 1.99 6.95 -38.95 -0.27 1.72 16 6 C -0.16 -3.33 10.06 -39.30 -0.40 -3.72 16 7 C -0.12 -2.23 10.02 -39.67 -0.40 -2.63 16 8 C -0.17 -3.48 10.07 -39.52 -0.40 -3.87 16 9 C -0.06 -1.31 9.15 -39.72 -0.36 -1.67 16 10 C -0.10 -2.56 5.31 -104.10 -0.55 -3.11 16 11 C 0.07 1.65 2.44 -91.56 -0.22 1.42 16 12 H 0.05 1.31 7.93 -51.93 -0.41 0.90 16 13 C -0.51 -13.52 8.02 -34.44 -0.28 -13.79 16 14 H 0.07 1.91 5.17 -52.49 -0.27 1.64 16 15 C 0.07 1.76 5.35 -17.82 -0.10 1.67 16 16 N -0.88 -23.88 10.36 55.43 0.57 -23.31 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 23 H 0.07 1.53 6.21 -51.93 -0.32 1.21 16 24 H 0.05 1.02 8.13 -51.92 -0.42 0.60 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.15 3.59 6.27 -52.48 -0.33 3.26 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 255.77 15.07 3.85 3.85 Total: -1.00 -28.09 255.77 -7.11 -35.20 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.85 Total: 2.34 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -2.45 Total: -26.59 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.57 Total: -23.31 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.21 Total: -7.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.09 -7.11 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957088.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.504 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds