Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 110.66868 * 2 1 4 4 O 1.43772 * 110.74941 * 123.22366 * 2 1 3 5 5 C 1.36128 * 109.23634 * 146.10352 * 4 2 1 6 6 C 1.39285 * 129.89377 * 161.14019 * 5 4 2 7 7 C 1.37937 * 120.24056 * 179.17338 * 6 5 4 8 8 C 1.38287 * 120.34658 * 0.50480 * 7 6 5 9 9 C 1.38343 * 119.76992 * 359.65554 * 8 7 6 10 10 C 1.37743 * 119.97894 * 0.26079 * 9 8 7 11 11 C 1.51642 * 132.17076 * 179.07927 * 10 9 8 12 12 H 1.08999 * 110.93838 * 314.01255 * 11 10 9 13 13 C 1.50700 * 110.94344 * 77.69873 * 11 10 9 14 14 H 1.08000 * 120.00026 * 114.42352 * 13 11 10 15 15 C 1.37879 * 119.99849 * 294.43458 * 13 11 10 16 16 N 1.31517 * 120.00027 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 119.99999 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47225 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47235 * 119.99448 * 17 15 13 20 20 H 1.48501 * 109.47328 * 239.99460 * 17 15 13 21 21 H 1.08993 * 109.47292 * 305.93130 * 1 2 3 22 22 H 1.09011 * 109.46618 * 65.92652 * 1 2 3 23 23 H 1.08993 * 109.47162 * 185.92482 * 1 2 3 24 24 H 1.09008 * 109.47204 * 181.76434 * 3 2 1 25 25 H 1.09005 * 109.47542 * 301.76270 * 3 2 1 26 26 H 1.08996 * 109.47174 * 61.76535 * 3 2 1 27 27 H 1.07999 * 119.87912 * 359.42077 * 6 5 4 28 28 H 1.07999 * 119.82276 * 180.24469 * 7 6 5 29 29 H 1.07999 * 120.11010 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.00772 * 180.23575 * 9 8 7 31 31 H 0.96996 * 120.00057 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4315 0.0000 4 8 2.0393 -0.7366 1.1247 5 6 3.1959 -1.3590 0.7666 6 6 4.2147 -1.8776 1.5624 7 6 5.3056 -2.4905 0.9821 8 6 5.4031 -2.5866 -0.3940 9 6 4.3971 -2.0712 -1.1915 10 6 3.3059 -1.4602 -0.6141 11 6 2.0781 -0.7969 -1.2076 12 1 2.3526 -0.1281 -2.0233 13 6 1.0803 -1.8268 -1.6708 14 1 0.1190 -1.9043 -1.1846 15 6 1.3947 -2.6705 -2.7150 16 7 2.5652 -2.5760 -3.3072 17 14 0.1582 -3.9476 -3.2888 18 1 -1.0730 -3.8499 -2.4642 19 1 -0.1796 -3.7042 -4.7142 20 1 0.7443 -5.3043 -3.1436 21 1 -0.3633 0.6030 0.8321 22 1 -0.3633 0.4192 -0.9384 23 1 -0.3633 -1.0221 0.1061 24 1 3.1594 1.4089 -0.0316 25 1 1.6921 1.9625 -0.8738 26 1 1.7434 1.9430 0.9054 27 1 4.1483 -1.8030 2.6377 28 1 6.0898 -2.8938 1.6057 29 1 6.2592 -3.0670 -0.8443 30 1 4.4674 -2.1475 -2.2666 31 1 2.7863 -3.1692 -4.0421 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957088.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = -24.796709 kcal Electronic energy + Delta-G solvation = -15031.779598 eV Core-core repulsion = 12663.806950 eV Total energy + Delta-G solvation = -2367.972648 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.95555 -38.24172 -35.62502 -33.81743 -31.86436 -30.71891 -29.02153 -27.72532 -25.51364 -23.05063 -22.13889 -21.12350 -18.60144 -17.68822 -17.04339 -16.52379 -16.24810 -15.95610 -14.82066 -14.75473 -14.35491 -14.04832 -13.57875 -13.46420 -13.26214 -12.98250 -12.89988 -12.68922 -12.59657 -12.36945 -12.01466 -11.94298 -11.43186 -11.00228 -10.94171 -10.58758 -9.42947 -8.76976 -8.10378 -6.24350 0.72286 0.78357 1.37986 1.41016 1.50692 2.39925 2.58953 3.09791 3.20520 4.01760 4.10179 4.14989 4.30506 4.36320 4.50490 4.64406 4.77499 4.79359 4.92386 4.94387 5.07943 5.09203 5.20914 5.40103 5.42378 5.59419 5.67744 5.75616 5.92625 6.05898 6.16754 6.20916 6.60936 6.82538 7.41815 8.92285 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.014663 C = 0.010521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.620597 B = 1909.108046 C = 2660.794010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.091 3.909 3 C -0.148 4.148 4 O -0.318 6.318 5 C 0.064 3.936 6 C -0.162 4.162 7 C -0.103 4.103 8 C -0.170 4.170 9 C -0.081 4.081 10 C -0.137 4.137 11 C 0.059 3.941 12 H 0.022 0.978 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.019 3.981 16 N -0.902 5.902 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.287 1.287 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.158 0.842 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 3.131 5.818 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.054 3.946 3 C -0.206 4.206 4 O -0.234 6.234 5 C 0.019 3.981 6 C -0.181 4.181 7 C -0.121 4.121 8 C -0.188 4.188 9 C -0.099 4.099 10 C -0.138 4.138 11 C 0.041 3.959 12 H 0.040 0.960 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.181 4.181 16 N -0.540 5.540 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.214 1.214 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.154 0.846 28 H 0.176 0.824 29 H 0.155 0.845 30 H 0.140 0.860 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.748 3.079 5.874 6.858 hybrid contribution -0.482 -0.860 -0.899 1.335 sum 1.266 2.218 4.975 5.592 Atomic orbital electron populations 1.21688 0.91142 1.02259 1.02435 1.22991 0.96105 0.91515 0.83992 1.22084 1.00596 0.94427 1.03457 1.86663 1.34928 1.62766 1.39042 1.20002 0.87880 0.96507 0.93730 1.20423 0.93058 1.04944 0.99656 1.21022 0.97501 0.98862 0.94711 1.21332 0.99829 1.03357 0.94280 1.20918 0.92389 0.95510 1.01092 1.21472 0.96597 1.02057 0.93722 1.19016 0.90539 0.93782 0.92592 0.96044 1.21565 1.01035 1.17786 1.16013 0.90847 1.25699 0.96920 0.98964 0.96494 1.70000 1.21788 1.38936 1.23314 0.85594 0.79580 0.78831 0.78213 1.19095 1.20283 1.21353 0.91147 0.90261 0.92763 0.93755 0.90006 0.90352 0.84557 0.82412 0.84483 0.86028 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 7.89 71.98 0.57 -3.87 16 2 C 0.09 3.87 1.16 -10.21 -0.01 3.85 16 3 C -0.15 -5.19 8.86 71.98 0.64 -4.55 16 4 O -0.32 -14.54 10.52 -95.01 -1.00 -15.54 16 5 C 0.06 2.94 6.95 22.68 0.16 3.10 16 6 C -0.16 -6.25 10.06 22.45 0.23 -6.03 16 7 C -0.10 -3.57 10.02 22.21 0.22 -3.35 16 8 C -0.17 -6.61 10.07 22.31 0.22 -6.38 16 9 C -0.08 -3.87 9.15 22.18 0.20 -3.67 16 10 C -0.14 -6.89 5.31 -19.53 -0.10 -7.00 16 11 C 0.06 3.01 2.44 -11.40 -0.03 2.98 16 12 H 0.02 1.18 7.93 -2.39 -0.02 1.16 16 13 C -0.53 -28.51 8.02 25.60 0.21 -28.31 16 14 H 0.07 3.88 5.17 -2.91 -0.02 3.86 16 15 C 0.02 1.06 5.35 84.65 0.45 1.51 16 16 N -0.90 -50.45 10.36 21.45 0.22 -50.23 16 17 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 23 H 0.05 2.22 6.21 -2.39 -0.01 2.21 16 24 H 0.04 1.62 8.13 -2.38 -0.02 1.60 16 25 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 29 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 30 H 0.12 6.31 6.27 -2.91 -0.02 6.29 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -61.42 255.77 5.12 -56.30 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.12 Total: 15.75 kcal Atomic # 6 Polarization: -54.46 SS G_CDS: 2.75 Total: -51.70 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.22 Total: -50.23 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.00 Total: -15.54 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -61.42 5.12 -56.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957088.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.507 kcal (2) G-P(sol) polarization free energy of solvation -61.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds