Wall clock time and date at job start Mon Mar 30 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37965 * 119.88159 * 2 1 4 4 C 1.38247 * 120.35573 * 180.02562 * 3 2 1 5 5 C 1.38395 * 119.76057 * 0.17823 * 4 3 2 6 6 C 1.37696 * 119.97943 * 0.02562 * 5 4 3 7 7 C 1.38929 * 120.78950 * 359.61965 * 6 5 4 8 8 O 1.36130 * 111.24234 * 180.59212 * 7 6 5 9 9 C 1.43754 * 109.29217 * 341.39152 * 8 7 6 10 10 H 1.08998 * 110.74905 * 269.23533 * 9 8 7 11 11 C 1.53001 * 110.90631 * 145.96043 * 9 8 7 12 12 C 1.51639 * 132.18609 * 179.58827 * 6 5 4 13 13 H 1.09001 * 110.97539 * 313.89359 * 12 6 5 14 14 C 1.50703 * 110.94324 * 77.56931 * 12 6 5 15 15 H 1.08003 * 119.99870 * 47.94755 * 14 12 6 16 16 C 1.37873 * 120.00283 * 227.95398 * 14 12 6 17 17 N 1.31518 * 120.00066 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00095 * 179.72357 * 16 14 12 19 19 H 1.48498 * 109.47476 * 89.99933 * 18 16 14 20 20 H 1.48503 * 109.47235 * 210.00074 * 18 16 14 21 21 H 1.48500 * 109.47222 * 329.99616 * 18 16 14 22 22 H 1.08999 * 109.47217 * 269.97976 * 1 2 3 23 23 H 1.09007 * 109.47307 * 29.97548 * 1 2 3 24 24 H 1.08998 * 109.47701 * 149.97347 * 1 2 3 25 25 H 1.08007 * 119.82623 * 0.04420 * 3 2 1 26 26 H 1.07996 * 120.12076 * 180.19798 * 4 3 2 27 27 H 1.08003 * 120.01360 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.46869 * 312.42758 * 11 9 8 29 29 H 1.09002 * 109.46734 * 72.42132 * 11 9 8 30 30 H 1.08995 * 109.47570 * 192.42465 * 11 9 8 31 31 H 0.96998 * 120.00043 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1962 0.0000 4 6 3.5768 1.2077 -0.0005 5 6 4.2736 0.0120 -0.0048 6 6 3.5896 -1.1831 -0.0090 7 6 2.2006 -1.2074 -0.0012 8 8 1.7297 -2.4847 0.0059 9 6 2.7695 -3.3766 -0.4298 10 1 2.7298 -3.5176 -1.5099 11 6 2.6743 -4.7212 0.2941 12 6 4.0589 -2.6249 -0.0223 13 1 4.8460 -2.7723 -0.7617 14 6 4.5223 -3.0532 1.3463 15 1 3.9105 -2.8479 2.2123 16 6 5.7273 -3.7069 1.4929 17 7 6.4722 -3.9573 0.4383 18 14 6.3052 -4.2308 3.1902 19 1 5.8101 -5.6003 3.4809 20 1 7.7896 -4.2218 3.2323 21 1 5.7756 -3.2868 4.2068 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3634 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6495 2.1288 0.0007 26 1 4.1110 2.1463 0.0027 27 1 5.3537 0.0162 -0.0057 28 1 2.5530 -4.5501 1.3637 29 1 1.8168 -5.2776 -0.0844 30 1 3.5851 -5.2936 0.1187 31 1 7.3198 -4.4175 0.5414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260958214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:03 Heat of formation + Delta-G solvation = -21.139448 kcal Electronic energy + Delta-G solvation = -14701.550271 eV Core-core repulsion = 12333.736214 eV Total energy + Delta-G solvation = -2367.814057 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21626 -36.83379 -33.78661 -32.09831 -30.58919 -29.84573 -26.29044 -26.04987 -24.25908 -21.28111 -20.50621 -19.61454 -17.06174 -16.03254 -15.46935 -14.90589 -14.53724 -14.29334 -13.37722 -12.95134 -12.85904 -12.40763 -12.29246 -11.83843 -11.72418 -11.41591 -11.22984 -11.00242 -10.94019 -10.70038 -10.35709 -10.28947 -9.72368 -9.37750 -9.33808 -8.63684 -7.87063 -7.20056 -6.17116 -4.20738 2.10948 2.17656 3.22493 3.29912 3.34958 4.21105 4.29433 4.54357 5.09237 5.45026 5.49627 5.71989 5.78996 5.95842 6.00286 6.03180 6.12021 6.26449 6.30849 6.33848 6.52391 6.74334 6.77668 7.06383 7.13309 7.23729 7.26789 7.29600 7.51773 7.59912 7.75025 8.10696 8.24102 8.86730 9.41083 10.89540 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033016 B = 0.010394 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.857572 B = 2693.180908 C = 3101.827293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.157 4.157 5 C -0.082 4.082 6 C -0.124 4.124 7 C 0.097 3.903 8 O -0.311 6.311 9 C 0.070 3.930 10 H 0.056 0.944 11 C -0.115 4.115 12 C 0.044 3.956 13 H 0.089 0.911 14 C -0.493 4.493 15 H 0.058 0.942 16 C 0.069 3.931 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 4.931 -1.611 8.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.131 4.131 4 C -0.175 4.175 5 C -0.100 4.100 6 C -0.125 4.125 7 C 0.051 3.949 8 O -0.225 6.225 9 C 0.014 3.986 10 H 0.074 0.926 11 C -0.172 4.172 12 C 0.026 3.974 13 H 0.107 0.893 14 C -0.531 4.531 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.171 4.730 -1.607 7.940 hybrid contribution 0.623 -0.263 0.900 1.126 sum -5.548 4.467 -0.707 7.158 Atomic orbital electron populations 1.20568 0.91832 1.01761 1.01495 1.18946 0.95398 0.90044 1.08013 1.20451 0.94094 0.95806 1.02773 1.20861 0.93969 0.97350 1.05328 1.20278 0.99695 0.90740 0.99277 1.21683 0.93237 0.98152 0.99392 1.19455 0.92461 0.85570 0.97373 1.86689 1.40108 1.13428 1.82313 1.23683 0.87768 0.90958 0.96153 0.92598 1.21532 1.00364 0.93894 1.01397 1.19352 0.93698 0.84563 0.99826 0.89254 1.20727 1.04209 1.36438 0.91677 0.92423 1.24988 0.96221 0.95253 0.96949 1.69879 1.12866 1.41087 1.28900 0.86542 0.77883 0.79163 0.84259 1.20341 1.21036 1.19684 0.92184 0.92435 0.91959 0.86631 0.86800 0.86510 0.91399 0.95008 0.90453 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.98 36.00 0.36 -1.18 16 2 C -0.12 -2.34 5.90 -104.35 -0.62 -2.95 16 3 C -0.11 -1.94 9.66 -39.68 -0.38 -2.33 16 4 C -0.16 -2.80 10.07 -39.52 -0.40 -3.20 16 5 C -0.08 -1.72 10.03 -39.72 -0.40 -2.11 16 6 C -0.12 -2.88 5.61 -104.10 -0.58 -3.47 16 7 C 0.10 2.16 6.74 -38.95 -0.26 1.89 16 8 O -0.31 -7.08 10.68 -20.15 -0.22 -7.30 16 9 C 0.07 1.58 4.16 -25.83 -0.11 1.47 16 10 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.11 -2.41 8.62 37.16 0.32 -2.09 16 12 C 0.04 1.11 3.27 -91.56 -0.30 0.81 16 13 H 0.09 2.41 7.06 -51.93 -0.37 2.04 16 14 C -0.49 -13.14 6.41 -34.44 -0.22 -13.36 16 15 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 16 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -24.43 12.67 55.43 0.70 -23.73 16 18 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.73 8.08 -51.92 -0.42 0.31 16 24 H 0.06 0.97 8.01 -51.93 -0.42 0.56 16 25 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 26 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 28 H 0.07 1.49 7.37 -51.93 -0.38 1.11 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.69 8.08 -51.93 -0.42 1.27 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 263.43 15.07 3.97 3.97 Total: -1.00 -28.00 263.43 -7.34 -35.33 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.09 Total: 0.78 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -2.69 Total: -24.79 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.70 Total: -23.73 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.22 Total: -7.30 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.00 -7.34 -35.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.194 kcal (2) G-P(sol) polarization free energy of solvation -27.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds