Wall clock time and date at job start Mon Mar 30 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37965 * 119.88159 * 2 1 4 4 C 1.38247 * 120.35573 * 180.02562 * 3 2 1 5 5 C 1.38395 * 119.76057 * 0.17823 * 4 3 2 6 6 C 1.37696 * 119.97943 * 0.02562 * 5 4 3 7 7 C 1.38929 * 120.78950 * 359.61965 * 6 5 4 8 8 O 1.36130 * 111.24234 * 180.59212 * 7 6 5 9 9 C 1.43754 * 109.29217 * 341.39152 * 8 7 6 10 10 H 1.08998 * 110.74905 * 269.23533 * 9 8 7 11 11 C 1.53001 * 110.90631 * 145.96043 * 9 8 7 12 12 C 1.51639 * 132.18609 * 179.58827 * 6 5 4 13 13 H 1.09001 * 110.97539 * 313.89359 * 12 6 5 14 14 C 1.50703 * 110.94324 * 77.56931 * 12 6 5 15 15 H 1.08003 * 119.99870 * 47.94755 * 14 12 6 16 16 C 1.37873 * 120.00283 * 227.95398 * 14 12 6 17 17 N 1.31518 * 120.00066 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00095 * 179.72357 * 16 14 12 19 19 H 1.48498 * 109.47476 * 89.99933 * 18 16 14 20 20 H 1.48503 * 109.47235 * 210.00074 * 18 16 14 21 21 H 1.48500 * 109.47222 * 329.99616 * 18 16 14 22 22 H 1.08999 * 109.47217 * 269.97976 * 1 2 3 23 23 H 1.09007 * 109.47307 * 29.97548 * 1 2 3 24 24 H 1.08998 * 109.47701 * 149.97347 * 1 2 3 25 25 H 1.08007 * 119.82623 * 0.04420 * 3 2 1 26 26 H 1.07996 * 120.12076 * 180.19798 * 4 3 2 27 27 H 1.08003 * 120.01360 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.46869 * 312.42758 * 11 9 8 29 29 H 1.09002 * 109.46734 * 72.42132 * 11 9 8 30 30 H 1.08995 * 109.47570 * 192.42465 * 11 9 8 31 31 H 0.96998 * 120.00043 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1962 0.0000 4 6 3.5768 1.2077 -0.0005 5 6 4.2736 0.0120 -0.0048 6 6 3.5896 -1.1831 -0.0090 7 6 2.2006 -1.2074 -0.0012 8 8 1.7297 -2.4847 0.0059 9 6 2.7695 -3.3766 -0.4298 10 1 2.7298 -3.5176 -1.5099 11 6 2.6743 -4.7212 0.2941 12 6 4.0589 -2.6249 -0.0223 13 1 4.8460 -2.7723 -0.7617 14 6 4.5223 -3.0532 1.3463 15 1 3.9105 -2.8479 2.2123 16 6 5.7273 -3.7069 1.4929 17 7 6.4722 -3.9573 0.4383 18 14 6.3052 -4.2308 3.1902 19 1 5.8101 -5.6003 3.4809 20 1 7.7896 -4.2218 3.2323 21 1 5.7756 -3.2868 4.2068 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3634 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6495 2.1288 0.0007 26 1 4.1110 2.1463 0.0027 27 1 5.3537 0.0162 -0.0057 28 1 2.5530 -4.5501 1.3637 29 1 1.8168 -5.2776 -0.0844 30 1 3.5851 -5.2936 0.1187 31 1 7.3198 -4.4175 0.5414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260958214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:03 Heat of formation + Delta-G solvation = -36.216774 kcal Electronic energy + Delta-G solvation = -14702.204073 eV Core-core repulsion = 12333.736214 eV Total energy + Delta-G solvation = -2368.467859 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.87668 -38.39008 -35.66274 -33.76303 -32.32041 -31.45553 -28.07576 -27.48582 -26.13901 -22.84538 -22.17611 -21.31999 -18.94991 -17.75828 -17.21646 -16.60203 -16.30285 -15.88403 -14.91798 -14.50949 -14.35694 -14.18939 -13.86648 -13.58343 -13.15247 -13.09082 -12.82304 -12.79397 -12.62714 -12.36187 -12.14563 -11.93150 -11.45059 -11.27542 -11.16673 -10.65337 -9.42607 -8.84050 -8.18852 -6.30318 0.56427 0.62946 1.37209 1.38898 1.49009 2.36603 2.56231 2.94830 3.08396 3.97032 4.12081 4.15356 4.26249 4.36211 4.52104 4.52222 4.66448 4.80990 4.86975 4.93871 5.04577 5.06436 5.15030 5.38614 5.46927 5.51451 5.63414 5.66208 5.71700 5.88335 5.96978 6.16395 6.53061 6.78069 7.33566 8.86132 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033016 B = 0.010394 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.857572 B = 2693.180908 C = 3101.827293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.145 4.145 5 C -0.104 4.104 6 C -0.161 4.161 7 C 0.066 3.934 8 O -0.319 6.319 9 C 0.070 3.930 10 H 0.065 0.935 11 C -0.105 4.105 12 C 0.038 3.962 13 H 0.056 0.944 14 C -0.499 4.499 15 H 0.040 0.960 16 C 0.027 3.973 17 N -0.919 5.919 18 Si 0.952 3.048 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.274 1.274 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.108 0.892 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 6.741 -1.182 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.163 4.163 5 C -0.122 4.122 6 C -0.162 4.162 7 C 0.021 3.979 8 O -0.234 6.234 9 C 0.015 3.985 10 H 0.083 0.917 11 C -0.162 4.162 12 C 0.019 3.981 13 H 0.074 0.926 14 C -0.536 4.536 15 H 0.058 0.942 16 C -0.173 4.173 17 N -0.557 5.557 18 Si 0.777 3.223 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.199 1.199 22 H 0.088 0.912 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.181 0.819 26 H 0.170 0.830 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.632 6.544 -1.180 10.122 hybrid contribution 1.029 -0.687 0.718 1.431 sum -6.602 5.857 -0.462 8.838 Atomic orbital electron populations 1.20633 0.89107 1.03139 1.02524 1.19539 0.97580 0.89275 1.06061 1.21022 0.93942 0.96930 1.00088 1.21287 0.94706 0.97372 1.02899 1.20469 0.99639 0.91589 1.00520 1.21692 0.94418 0.97809 1.02286 1.19832 0.92363 0.86202 0.99476 1.86635 1.39829 1.14031 1.82896 1.23628 0.86753 0.91339 0.96818 0.91717 1.21417 1.00988 0.93430 1.00383 1.19236 0.93897 0.86837 0.98110 0.92555 1.20759 1.04296 1.36680 0.91913 0.94174 1.25635 0.96235 0.95307 1.00137 1.69984 1.13229 1.41955 1.30561 0.85651 0.77529 0.78986 0.80173 1.19348 1.20457 1.19917 0.91184 0.88941 0.92768 0.81868 0.83018 0.87406 0.92883 0.91792 0.91911 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.98 71.24 0.71 -1.94 16 2 C -0.12 -4.38 5.90 -19.69 -0.12 -4.49 16 3 C -0.10 -3.08 9.66 22.21 0.21 -2.86 16 4 C -0.14 -4.74 10.07 22.31 0.22 -4.51 16 5 C -0.10 -4.38 10.03 22.18 0.22 -4.15 16 6 C -0.16 -7.70 5.61 -19.53 -0.11 -7.81 16 7 C 0.07 2.94 6.74 22.68 0.15 3.09 16 8 O -0.32 -14.67 10.68 -95.03 -1.02 -15.69 16 9 C 0.07 3.26 4.16 31.18 0.13 3.39 16 10 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 11 C -0.11 -4.49 8.62 71.98 0.62 -3.87 16 12 C 0.04 1.99 3.27 -11.40 -0.04 1.95 16 13 H 0.06 3.24 7.06 -2.39 -0.02 3.22 16 14 C -0.50 -27.61 6.41 25.60 0.16 -27.45 16 15 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 16 C 0.03 1.45 5.46 84.65 0.46 1.92 16 17 N -0.92 -52.14 12.67 21.45 0.27 -51.87 16 18 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.09 1.87 8.08 -2.38 -0.02 1.85 16 24 H 0.05 1.56 8.01 -2.39 -0.02 1.54 16 25 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 26 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.05 2.38 7.37 -2.39 -0.02 2.37 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.83 8.08 -2.39 -0.02 2.81 16 31 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -62.34 263.43 5.03 -57.31 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.11 Total: 11.69 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 2.64 Total: -46.75 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.27 Total: -51.87 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.02 Total: -15.69 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -62.34 5.03 -57.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.093 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds