Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 109.80084 * 60.54567 * 9 7 2 11 11 C 1.51135 * 109.80590 * 299.72007 * 9 7 2 12 12 O 1.33910 * 127.27066 * 72.87266 * 11 9 7 13 13 C 1.34475 * 109.38188 * 180.32704 * 12 11 9 14 14 C 1.34687 * 108.46100 * 359.83051 * 13 12 11 15 15 C 1.34716 * 124.26186 * 252.91613 * 11 9 7 16 16 C 1.50582 * 125.67329 * 359.41955 * 15 11 9 17 17 C 1.53333 * 109.16184 * 18.34748 * 16 15 11 18 18 C 1.53138 * 109.13075 * 313.34840 * 17 16 15 19 19 C 1.52768 * 117.78038 * 209.61326 * 18 17 16 20 20 C 1.52722 * 117.84539 * 278.61763 * 18 17 16 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.76977 * 179.81009 * 13 12 11 23 23 H 1.08001 * 126.63346 * 179.97438 * 14 13 12 24 24 H 1.09001 * 109.52504 * 138.25302 * 16 15 11 25 25 H 1.09001 * 109.52381 * 258.37637 * 16 15 11 26 26 H 1.09007 * 109.52960 * 73.20844 * 17 16 15 27 27 H 1.08996 * 109.53856 * 193.35582 * 17 16 15 28 28 H 1.08995 * 117.50645 * 215.30460 * 19 18 17 29 29 H 1.08997 * 117.50690 * 0.36708 * 19 18 17 30 30 H 1.08995 * 117.50310 * 359.74466 * 20 18 17 31 31 H 1.08998 * 117.50340 * 144.80469 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6334 -2.5650 -0.9011 11 6 0.3791 -2.5927 1.2256 12 8 -0.7509 -1.9177 1.4722 13 6 -1.2286 -2.2726 2.6781 14 6 -0.3990 -3.1892 3.2126 15 6 0.6338 -3.3966 2.2762 16 6 1.8046 -4.3354 2.3999 17 6 2.8886 -3.9230 1.3969 18 6 2.2403 -3.6709 0.0327 19 6 3.0840 -3.9272 -1.2149 20 6 1.9436 -4.8809 -0.8507 21 1 -0.4850 0.8401 -0.0004 22 1 -2.1257 -1.8875 3.1401 23 1 -0.5047 -3.6718 4.1730 24 1 2.2066 -4.2851 3.4119 25 1 1.4791 -5.3538 2.1876 26 1 3.3765 -3.0113 1.7420 27 1 3.6266 -4.7203 1.3093 28 1 2.9342 -3.2662 -2.0684 29 1 4.1038 -4.2829 -1.0685 30 1 2.2135 -5.8639 -0.4649 31 1 1.0438 -4.8472 -1.4649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = 15.019597 kcal Electronic energy + Delta-G solvation = -15089.919402 eV Core-core repulsion = 12723.673319 eV Total energy + Delta-G solvation = -2366.246083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.06224 -39.49781 -35.03773 -34.86724 -31.94491 -31.03605 -28.26752 -25.86894 -24.08067 -23.04830 -21.86523 -21.10573 -19.10092 -18.05149 -17.47364 -16.73502 -16.44609 -15.87601 -15.25232 -14.81870 -14.47518 -14.14808 -13.77323 -13.29765 -13.10814 -12.88612 -12.78467 -12.52976 -12.23538 -12.07891 -11.98697 -11.73927 -11.22238 -10.80420 -10.52988 -10.25615 -10.09127 -8.74167 -8.08547 -6.26284 1.34150 1.39019 1.42123 1.50948 2.05344 2.40600 2.71914 3.16313 3.20085 3.94904 4.09020 4.21847 4.32034 4.36441 4.42693 4.65588 4.76161 4.88680 4.91033 4.95483 5.05119 5.12947 5.18078 5.38423 5.43638 5.46924 5.53915 5.67532 5.77546 5.84697 6.11764 6.23599 6.76242 6.97093 7.40713 8.92416 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.015257 C = 0.010856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.644923 B = 1834.812342 C = 2578.641012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.287 1.287 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.147 3.853 10 H 0.001 0.999 11 C 0.040 3.960 12 O -0.154 6.154 13 C -0.109 4.109 14 C -0.216 4.216 15 C -0.249 4.249 16 C -0.029 4.029 17 C -0.070 4.070 18 C -0.116 4.116 19 C -0.160 4.160 20 C -0.172 4.172 21 H 0.260 0.740 22 H 0.212 0.788 23 H 0.162 0.838 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 -7.880 3.451 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.129 3.871 10 H 0.018 0.982 11 C -0.013 4.013 12 O -0.047 6.047 13 C -0.177 4.177 14 C -0.235 4.235 15 C -0.250 4.250 16 C -0.066 4.066 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.197 4.197 20 C -0.208 4.208 21 H 0.069 0.931 22 H 0.228 0.772 23 H 0.180 0.820 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.927 -7.553 3.246 8.726 hybrid contribution -0.215 1.348 0.105 1.369 sum 2.712 -6.205 3.351 7.555 Atomic orbital electron populations 1.70137 1.06972 1.27018 1.48682 1.25846 0.95712 1.02583 0.94890 0.85573 0.79442 0.79783 0.77337 1.18597 1.20462 1.21325 1.21262 0.93100 0.90247 1.51347 0.91827 1.17030 0.89240 0.93376 0.87499 0.98156 1.23596 0.86299 0.91227 1.00202 1.84348 1.34180 1.53694 1.32451 1.24609 1.03141 1.02596 0.87356 1.21691 0.96870 1.03032 1.01906 1.20420 1.02307 1.06169 0.96126 1.19826 0.91233 0.96339 0.99179 1.21048 0.96796 1.00912 0.91987 1.21330 1.01117 0.96120 0.93094 1.22874 0.96371 1.02180 0.98261 1.23027 0.99544 0.95009 1.03257 0.93140 0.77150 0.82029 0.90596 0.90665 0.93233 0.89256 0.90440 0.86952 0.86737 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.90 10.82 21.45 0.23 -52.67 16 2 C 0.01 0.62 5.31 84.66 0.45 1.07 16 3 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.52 -28.88 8.32 25.60 0.21 -28.67 16 8 H 0.06 3.44 7.75 -2.91 -0.02 3.42 16 9 C 0.15 7.60 2.28 -12.01 -0.03 7.57 16 10 H 0.00 0.03 8.03 -2.39 -0.02 0.01 16 11 C 0.04 2.06 6.05 25.02 0.15 2.21 16 12 O -0.15 -8.24 8.49 -0.44 0.00 -8.24 16 13 C -0.11 -4.68 12.09 67.01 0.81 -3.87 16 14 C -0.22 -8.61 10.88 22.12 0.24 -8.36 16 15 C -0.25 -10.92 5.93 -20.05 -0.12 -11.04 16 16 C -0.03 -1.00 6.26 29.92 0.19 -0.81 16 17 C -0.07 -2.47 5.59 30.75 0.17 -2.30 16 18 C -0.12 -4.67 1.25 -52.17 -0.07 -4.74 16 19 C -0.16 -5.52 9.86 30.53 0.30 -5.22 16 20 C -0.17 -5.74 9.93 30.52 0.30 -5.43 16 21 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 22 H 0.21 7.08 8.06 -2.91 -0.02 7.05 16 23 H 0.16 5.10 8.06 -2.91 -0.02 5.08 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.94 8.06 -2.38 -0.02 1.92 16 27 H 0.09 2.46 8.11 -2.39 -0.02 2.44 16 28 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.08 2.67 8.13 -2.39 -0.02 2.65 16 Total: -1.00 -65.40 259.14 5.98 -59.43 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.11 Total: 14.61 kcal Atomic # 6 Polarization: -62.21 SS G_CDS: 2.62 Total: -59.59 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.23 Total: -52.67 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.00 Total: -8.24 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.40 5.98 -59.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.445 kcal (2) G-P(sol) polarization free energy of solvation -65.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds