Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 120.12027 * 2 1 4 4 C 1.37926 * 120.35222 * 179.82911 * 3 2 1 5 5 C 1.39284 * 120.24101 * 359.96291 * 4 3 2 6 6 C 1.38881 * 118.87423 * 0.36728 * 5 4 3 7 7 C 1.37739 * 120.78928 * 359.48169 * 6 5 4 8 8 C 1.51652 * 107.03945 * 179.46156 * 6 5 4 9 9 H 1.09001 * 110.96831 * 226.44517 * 8 6 5 10 10 C 1.50697 * 110.93825 * 102.77551 * 8 6 5 11 11 H 1.08000 * 119.99705 * 247.45489 * 10 8 6 12 12 C 1.37878 * 119.99818 * 67.46196 * 10 8 6 13 13 N 1.31509 * 120.00119 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99478 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47406 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46984 * 119.99668 * 14 12 10 17 17 H 1.48505 * 109.46589 * 239.99320 * 14 12 10 18 18 C 1.54706 * 101.92665 * 344.61580 * 8 6 5 19 19 H 1.09002 * 110.74721 * 143.60765 * 18 8 6 20 20 C 1.53003 * 110.75014 * 266.77562 * 18 8 6 21 21 O 1.36140 * 129.88578 * 181.01268 * 5 4 3 22 22 H 1.08998 * 109.47054 * 270.02309 * 1 2 3 23 23 H 1.09000 * 109.46611 * 30.01825 * 1 2 3 24 24 H 1.08996 * 109.47251 * 150.01897 * 1 2 3 25 25 H 1.08001 * 119.82037 * 359.81709 * 3 2 1 26 26 H 1.08005 * 119.88090 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.01092 * 180.31360 * 7 6 5 28 28 H 0.97006 * 119.99575 * 179.97438 * 13 12 10 29 29 H 1.09006 * 109.47069 * 57.48505 * 20 18 8 30 30 H 1.09002 * 109.47107 * 177.48525 * 20 18 8 31 31 H 1.09001 * 109.47247 * 297.48494 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2017 0.0035 5 6 4.2865 0.0012 0.0079 6 6 3.5785 -1.1935 0.0009 7 6 2.2011 -1.1968 0.0004 8 6 4.5993 -2.3150 -0.0057 9 1 4.3433 -3.0712 -0.7478 10 6 4.7317 -2.9308 1.3633 11 1 5.6485 -2.8134 1.9219 12 6 3.6823 -3.6443 1.9026 13 7 2.5658 -3.7869 1.2225 14 14 3.8467 -4.4083 3.5994 15 1 5.1919 -4.1053 4.1505 16 1 2.8055 -3.8476 4.4976 17 1 3.6733 -5.8797 3.4985 18 6 5.8938 -1.5667 -0.4028 19 1 6.7551 -1.9793 0.1226 20 6 6.1083 -1.6205 -1.9168 21 8 5.6294 -0.2215 0.0304 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8898 -0.5141 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6600 2.1309 -0.0030 26 1 4.1145 2.1403 0.0031 27 1 1.6632 -2.1333 0.0000 28 1 1.8277 -4.2892 1.6019 29 1 5.2424 -1.1924 -2.4219 30 1 6.9999 -1.0503 -2.1779 31 1 6.2355 -2.6570 -2.2291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963678.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = -20.812164 kcal Electronic energy + Delta-G solvation = -14785.343404 eV Core-core repulsion = 12417.543539 eV Total energy + Delta-G solvation = -2367.799865 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13376 -36.85877 -33.51471 -31.47140 -30.98479 -29.69133 -27.24318 -25.52801 -23.72329 -21.43894 -20.18606 -19.90895 -16.69871 -15.95921 -15.51575 -14.61197 -14.52962 -14.25029 -13.02321 -13.00365 -12.83210 -12.62502 -12.16345 -11.80632 -11.72076 -11.46460 -11.33556 -11.09128 -10.89116 -10.62260 -10.48615 -10.07804 -9.80309 -9.35907 -9.29288 -8.57826 -7.70288 -6.96720 -6.13591 -4.20652 2.34698 2.44600 3.23958 3.32174 3.36299 4.29066 4.33181 4.76373 5.17859 5.61093 5.64975 5.73565 5.81247 5.90419 5.95343 6.04044 6.16653 6.29521 6.32626 6.36735 6.54452 6.57425 6.75490 6.83032 7.21402 7.26431 7.37533 7.55132 7.71263 7.80912 7.90020 8.12072 8.30433 8.80324 9.43581 10.91699 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.013847 C = 0.009828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.530187 B = 2021.545486 C = 2848.189098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.157 4.157 5 C 0.080 3.920 6 C -0.101 4.101 7 C -0.054 4.054 8 C 0.060 3.940 9 H 0.054 0.946 10 C -0.510 4.510 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.880 5.880 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.071 3.929 19 H 0.103 0.897 20 C -0.164 4.164 21 O -0.311 6.311 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.144 0.856 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 4.785 -3.732 6.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C -0.134 4.134 4 C -0.176 4.176 5 C 0.035 3.965 6 C -0.102 4.102 7 C -0.072 4.072 8 C 0.042 3.958 9 H 0.072 0.928 10 C -0.547 4.547 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.517 5.517 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.016 3.984 19 H 0.120 0.880 20 C -0.221 4.221 21 O -0.226 6.226 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.162 0.838 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.597 4.831 -3.662 6.092 hybrid contribution -0.047 -0.476 1.054 1.158 sum -0.644 4.355 -2.608 5.117 Atomic orbital electron populations 1.20572 0.92223 1.01391 1.01233 1.19782 0.95322 0.93391 1.05522 1.20370 0.92729 0.96943 1.03339 1.19916 0.93337 0.94780 1.09532 1.19684 0.83754 0.94771 0.98303 1.21383 0.94893 0.94954 0.98974 1.20728 0.93065 0.97760 0.95696 1.19098 0.86343 0.92022 0.98335 0.92837 1.21020 1.00674 1.32065 1.00951 0.91874 1.24948 0.95100 0.95712 0.97767 1.69860 1.04109 1.40268 1.37475 0.86454 0.78354 0.78796 0.83990 1.19649 1.20880 1.20838 1.23566 1.01158 0.80258 0.93451 0.87953 1.22205 1.01432 1.01994 0.96517 1.86714 1.20173 1.33470 1.82207 0.92351 0.92823 0.92160 0.87081 0.87314 0.83811 0.92785 0.92627 0.92903 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.02 36.01 0.36 -1.21 16 2 C -0.14 -2.83 5.89 -104.56 -0.62 -3.44 16 3 C -0.12 -2.20 9.68 -39.68 -0.38 -2.59 16 4 C -0.16 -3.22 10.06 -39.31 -0.40 -3.61 16 5 C 0.08 1.86 6.94 -38.95 -0.27 1.59 16 6 C -0.10 -2.49 5.34 -104.10 -0.56 -3.04 16 7 C -0.05 -1.28 8.90 -39.72 -0.35 -1.63 16 8 C 0.06 1.51 2.49 -91.56 -0.23 1.28 16 9 H 0.05 1.39 7.92 -51.93 -0.41 0.98 16 10 C -0.51 -13.81 8.53 -34.44 -0.29 -14.11 16 11 H 0.06 1.71 7.63 -52.49 -0.40 1.31 16 12 C 0.07 1.82 5.37 -17.82 -0.10 1.73 16 13 N -0.88 -23.93 10.56 55.43 0.59 -23.35 16 14 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.07 1.54 3.83 -25.83 -0.10 1.44 16 19 H 0.10 2.11 7.79 -51.93 -0.40 1.71 16 20 C -0.16 -2.90 9.51 37.16 0.35 -2.55 16 21 O -0.31 -7.20 10.83 -20.19 -0.22 -7.42 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 24 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 25 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.11 1.96 8.06 -52.48 -0.42 1.53 16 27 H 0.14 3.57 6.34 -52.49 -0.33 3.24 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 29 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 261.62 15.07 3.94 3.94 Total: -1.00 -28.42 261.62 -7.35 -35.77 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.06 Total: 1.20 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -2.58 Total: -26.16 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.59 Total: -23.35 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.22 Total: -7.42 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.42 -7.35 -35.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963678.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.953 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds