Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 120.12027 * 2 1 4 4 C 1.37926 * 120.35222 * 179.82911 * 3 2 1 5 5 C 1.39284 * 120.24101 * 359.96291 * 4 3 2 6 6 C 1.38881 * 118.87423 * 0.36728 * 5 4 3 7 7 C 1.37739 * 120.78928 * 359.48169 * 6 5 4 8 8 C 1.51652 * 107.03945 * 179.46156 * 6 5 4 9 9 H 1.09001 * 110.96831 * 226.44517 * 8 6 5 10 10 C 1.50697 * 110.93825 * 102.77551 * 8 6 5 11 11 H 1.08000 * 119.99705 * 247.45489 * 10 8 6 12 12 C 1.37878 * 119.99818 * 67.46196 * 10 8 6 13 13 N 1.31509 * 120.00119 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99478 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47406 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46984 * 119.99668 * 14 12 10 17 17 H 1.48505 * 109.46589 * 239.99320 * 14 12 10 18 18 C 1.54706 * 101.92665 * 344.61580 * 8 6 5 19 19 H 1.09002 * 110.74721 * 143.60765 * 18 8 6 20 20 C 1.53003 * 110.75014 * 266.77562 * 18 8 6 21 21 O 1.36140 * 129.88578 * 181.01268 * 5 4 3 22 22 H 1.08998 * 109.47054 * 270.02309 * 1 2 3 23 23 H 1.09000 * 109.46611 * 30.01825 * 1 2 3 24 24 H 1.08996 * 109.47251 * 150.01897 * 1 2 3 25 25 H 1.08001 * 119.82037 * 359.81709 * 3 2 1 26 26 H 1.08005 * 119.88090 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.01092 * 180.31360 * 7 6 5 28 28 H 0.97006 * 119.99575 * 179.97438 * 13 12 10 29 29 H 1.09006 * 109.47069 * 57.48505 * 20 18 8 30 30 H 1.09002 * 109.47107 * 177.48525 * 20 18 8 31 31 H 1.09001 * 109.47247 * 297.48494 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2017 0.0035 5 6 4.2865 0.0012 0.0079 6 6 3.5785 -1.1935 0.0009 7 6 2.2011 -1.1968 0.0004 8 6 4.5993 -2.3150 -0.0057 9 1 4.3433 -3.0712 -0.7478 10 6 4.7317 -2.9308 1.3633 11 1 5.6485 -2.8134 1.9219 12 6 3.6823 -3.6443 1.9026 13 7 2.5658 -3.7869 1.2225 14 14 3.8467 -4.4083 3.5994 15 1 5.1919 -4.1053 4.1505 16 1 2.8055 -3.8476 4.4976 17 1 3.6733 -5.8797 3.4985 18 6 5.8938 -1.5667 -0.4028 19 1 6.7551 -1.9793 0.1226 20 6 6.1083 -1.6205 -1.9168 21 8 5.6294 -0.2215 0.0304 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8898 -0.5141 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6600 2.1309 -0.0030 26 1 4.1145 2.1403 0.0031 27 1 1.6632 -2.1333 0.0000 28 1 1.8277 -4.2892 1.6019 29 1 5.2424 -1.1924 -2.4219 30 1 6.9999 -1.0503 -2.1779 31 1 6.2355 -2.6570 -2.2291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963678.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = -36.111529 kcal Electronic energy + Delta-G solvation = -14786.006834 eV Core-core repulsion = 12417.543539 eV Total energy + Delta-G solvation = -2368.463295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.84374 -38.47827 -35.45653 -33.18473 -32.63044 -31.30019 -29.04662 -27.05057 -25.59322 -23.06056 -21.95419 -21.58185 -18.66296 -17.70457 -17.19812 -16.48539 -16.31324 -15.80843 -14.77078 -14.44099 -14.39369 -14.27349 -13.83243 -13.46068 -13.33722 -13.16746 -12.82904 -12.75051 -12.62937 -12.35751 -12.24750 -11.86521 -11.50895 -11.15915 -11.04972 -10.62453 -9.42565 -8.65940 -8.15180 -6.31016 0.68207 0.77309 1.36451 1.38839 1.49432 2.37148 2.62424 3.03525 3.15786 4.02478 4.11927 4.21727 4.26628 4.36187 4.45090 4.63109 4.68328 4.78739 4.88686 4.92281 5.05929 5.13487 5.17515 5.23362 5.40418 5.56508 5.63790 5.70333 5.92058 6.04464 6.12341 6.16317 6.57014 6.75998 7.35167 8.87208 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.013847 C = 0.009828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.530187 B = 2021.545486 C = 2848.189098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.140 4.140 3 C -0.106 4.106 4 C -0.155 4.155 5 C 0.055 3.945 6 C -0.132 4.132 7 C -0.081 4.081 8 C 0.053 3.947 9 H 0.028 0.972 10 C -0.533 4.533 11 H 0.054 0.946 12 C 0.024 3.976 13 N -0.898 5.898 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.072 3.928 19 H 0.105 0.895 20 C -0.153 4.153 21 O -0.321 6.321 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.157 0.843 26 H 0.138 0.862 27 H 0.121 0.879 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 6.461 -3.637 7.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C -0.123 4.123 4 C -0.174 4.174 5 C 0.011 3.989 6 C -0.133 4.133 7 C -0.099 4.099 8 C 0.035 3.965 9 H 0.046 0.954 10 C -0.571 4.571 11 H 0.072 0.928 12 C -0.177 4.177 13 N -0.535 5.535 14 Si 0.780 3.220 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.199 1.199 18 C 0.016 3.984 19 H 0.123 0.877 20 C -0.210 4.210 21 O -0.237 6.237 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.139 0.861 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.115 6.505 -3.579 7.508 hybrid contribution 0.065 -0.962 0.997 1.387 sum -1.050 5.543 -2.581 6.204 Atomic orbital electron populations 1.20629 0.89274 1.03055 1.02176 1.20232 0.97543 0.92587 1.03676 1.20880 0.92319 0.98234 1.00905 1.20395 0.94189 0.94871 1.07905 1.19998 0.83645 0.95447 0.99822 1.21436 0.95492 0.95417 1.00974 1.20753 0.92974 0.98463 0.97732 1.19041 0.88716 0.92114 0.96671 0.95400 1.21280 1.00569 1.33023 1.02179 0.92763 1.25663 0.94899 0.96185 1.00974 1.69987 1.04427 1.40478 1.38601 0.85553 0.78111 0.78320 0.79981 1.19485 1.20875 1.19895 1.23617 0.99502 0.79362 0.95920 0.87709 1.22110 1.02150 1.03282 0.93467 1.86664 1.20361 1.33835 1.82819 0.91611 0.89420 0.92320 0.82507 0.84455 0.86142 0.92717 0.93520 0.90294 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 10.02 71.24 0.71 -2.09 16 2 C -0.14 -5.42 5.89 -19.83 -0.12 -5.53 16 3 C -0.11 -3.66 9.68 22.21 0.21 -3.45 16 4 C -0.16 -5.99 10.06 22.45 0.23 -5.76 16 5 C 0.06 2.57 6.94 22.68 0.16 2.73 16 6 C -0.13 -6.66 5.34 -19.52 -0.10 -6.76 16 7 C -0.08 -3.87 8.90 22.18 0.20 -3.67 16 8 C 0.05 2.74 2.49 -11.40 -0.03 2.72 16 9 H 0.03 1.54 7.92 -2.39 -0.02 1.52 16 10 C -0.53 -29.83 8.53 25.60 0.22 -29.61 16 11 H 0.05 3.03 7.63 -2.91 -0.02 3.01 16 12 C 0.02 1.31 5.37 84.66 0.45 1.76 16 13 N -0.90 -50.27 10.56 21.45 0.23 -50.05 16 14 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 C 0.07 3.12 3.83 31.18 0.12 3.24 16 19 H 0.11 4.40 7.79 -2.39 -0.02 4.38 16 20 C -0.15 -5.33 9.51 71.98 0.68 -4.65 16 21 O -0.32 -14.88 10.83 -95.15 -1.03 -15.91 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 24 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 25 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 26 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.12 6.24 6.34 -2.91 -0.02 6.22 16 28 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 29 H 0.05 1.69 8.11 -2.38 -0.02 1.67 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.47 261.62 5.07 -57.40 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.11 Total: 13.85 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 2.74 Total: -51.08 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.23 Total: -50.05 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.03 Total: -15.91 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -62.47 5.07 -57.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963678.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.291 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds