Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38294 * 120.11399 * 2 1 4 4 C 1.37937 * 120.34773 * 179.60085 * 3 2 1 5 5 C 1.39289 * 120.23787 * 0.51928 * 4 3 2 6 6 C 1.38874 * 118.87830 * 0.06343 * 5 4 3 7 7 C 1.37743 * 120.79031 * 359.50930 * 6 5 4 8 8 C 1.51648 * 107.03878 * 179.05269 * 6 5 4 9 9 H 1.08999 * 110.93769 * 102.82807 * 8 6 5 10 10 C 1.50700 * 110.93715 * 226.50916 * 8 6 5 11 11 H 1.07996 * 120.00196 * 55.10382 * 10 8 6 12 12 C 1.37879 * 119.99775 * 235.09918 * 10 8 6 13 13 N 1.31514 * 120.00225 * 5.78276 * 12 10 8 14 14 Si 1.86798 * 120.00087 * 185.78596 * 12 10 8 15 15 H 1.48502 * 109.47646 * 89.99653 * 14 12 10 16 16 H 1.48500 * 109.47120 * 210.00211 * 14 12 10 17 17 H 1.48502 * 109.46929 * 329.99916 * 14 12 10 18 18 C 1.54704 * 101.92915 * 344.66746 * 8 6 5 19 19 H 1.09007 * 110.90775 * 266.87881 * 18 8 6 20 20 C 1.53000 * 110.74854 * 143.60257 * 18 8 6 21 21 O 1.36141 * 129.88436 * 180.31485 * 5 4 3 22 22 H 1.09006 * 109.47466 * 269.72153 * 1 2 3 23 23 H 1.09005 * 109.47225 * 149.72466 * 1 2 3 24 24 H 1.08996 * 109.47787 * 29.72134 * 1 2 3 25 25 H 1.07995 * 119.82319 * 359.85640 * 3 2 1 26 26 H 1.07993 * 119.87731 * 180.23709 * 4 3 2 27 27 H 1.07994 * 120.01327 * 180.31141 * 7 6 5 28 28 H 0.97002 * 120.00089 * 180.02562 * 13 12 10 29 29 H 1.09007 * 109.46869 * 305.18212 * 20 18 8 30 30 H 1.08999 * 109.47298 * 65.18227 * 20 18 8 31 31 H 1.09001 * 109.47333 * 185.18823 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2007 1.1963 0.0000 4 6 3.5801 1.2019 0.0083 5 6 4.2865 0.0014 0.0058 6 6 3.5786 -1.1933 -0.0064 7 6 2.2011 -1.1967 -0.0059 8 6 4.5994 -2.3144 -0.0302 9 1 4.7017 -2.7690 0.9552 10 6 4.2382 -3.3498 -1.0639 11 1 4.0817 -3.0556 -2.0911 12 6 4.1076 -4.6728 -0.6981 13 7 4.1856 -5.0154 0.5692 14 14 3.8200 -5.9785 -2.0026 15 1 5.1268 -6.4975 -2.4802 16 1 3.0273 -7.0920 -1.4220 17 1 3.0770 -5.3839 -3.1426 18 6 5.8912 -1.5623 -0.4289 19 1 6.0384 -1.5875 -1.5087 20 6 7.1050 -2.1481 0.2953 21 8 5.6295 -0.2212 0.0184 22 1 -0.3634 -0.0050 1.0277 23 1 -0.3634 -0.8875 -0.5181 24 1 -0.3634 0.8924 -0.5095 25 1 1.6598 2.1310 -0.0023 26 1 4.1142 2.1405 0.0121 27 1 1.6633 -2.1332 -0.0104 28 1 4.0941 -5.9462 0.8265 29 1 6.9243 -2.1423 1.3703 30 1 7.2688 -3.1722 -0.0400 31 1 7.9864 -1.5471 0.0718 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -24.158493 kcal Electronic energy + Delta-G solvation = -14534.121538 eV Core-core repulsion = 12166.176565 eV Total energy + Delta-G solvation = -2367.944973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16377 -37.03202 -33.61427 -31.58191 -31.15238 -29.99498 -27.02006 -25.55738 -23.99274 -21.30119 -20.33435 -19.95001 -16.85526 -16.50025 -15.31039 -14.70452 -14.56208 -14.12387 -13.40934 -13.12816 -12.95352 -12.44897 -12.27367 -12.03805 -11.80133 -11.47076 -11.34837 -11.07204 -11.04497 -10.71427 -10.46554 -10.08317 -9.72202 -9.48835 -9.33956 -8.64559 -7.98829 -7.13605 -6.18691 -4.23842 2.12255 2.18501 3.21419 3.29128 3.32741 4.16527 4.29067 4.56712 5.06217 5.43967 5.46772 5.70521 5.82667 5.89211 5.98382 6.00525 6.06742 6.18538 6.31073 6.36689 6.47214 6.59997 6.68774 6.85824 7.02789 7.08254 7.31992 7.44843 7.50733 7.53204 7.73136 8.11954 8.21962 8.85645 9.40039 10.88646 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.011440 C = 0.008487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.165372 B = 2446.950612 C = 3298.466974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.150 4.150 5 C 0.084 3.916 6 C -0.121 4.121 7 C -0.065 4.065 8 C 0.045 3.955 9 H 0.095 0.905 10 C -0.509 4.509 11 H 0.058 0.942 12 C 0.071 3.929 13 N -0.887 5.887 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.070 3.930 19 H 0.073 0.927 20 C -0.131 4.131 21 O -0.323 6.323 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.265 0.735 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 6.804 -0.652 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.132 4.132 3 C -0.129 4.129 4 C -0.169 4.169 5 C 0.039 3.961 6 C -0.122 4.122 7 C -0.083 4.083 8 C 0.027 3.973 9 H 0.112 0.888 10 C -0.546 4.546 11 H 0.077 0.923 12 C -0.133 4.133 13 N -0.523 5.523 14 Si 0.722 3.278 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.197 1.197 18 C 0.015 3.985 19 H 0.091 0.909 20 C -0.189 4.189 21 O -0.238 6.238 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.009 6.763 -0.467 7.070 hybrid contribution -0.152 -0.877 -0.713 1.141 sum -2.162 5.885 -1.180 6.380 Atomic orbital electron populations 1.20615 0.91873 1.01873 1.01418 1.19703 0.95431 0.93116 1.04916 1.20423 0.92714 0.97048 1.02755 1.20025 0.93384 0.95006 1.08500 1.19694 0.84023 0.94575 0.97819 1.21722 0.95182 0.96073 0.99223 1.20197 0.92761 0.97068 0.98274 1.19365 0.86080 0.90952 1.00934 0.88755 1.20840 1.48388 0.91106 0.94291 0.92329 1.25020 0.94064 0.98811 0.95392 1.69897 1.49094 1.18065 1.15292 0.86545 0.78435 0.81091 0.81741 1.20364 1.21063 1.19658 1.23861 0.98556 0.78232 0.97889 0.90877 1.21685 0.95684 1.00843 1.00650 1.86681 1.19664 1.35106 1.82334 0.92093 0.91991 0.92432 0.86615 0.86886 0.86129 0.92487 0.92477 0.90356 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.02 36.00 0.36 -1.07 16 2 C -0.13 -2.39 5.89 -104.56 -0.62 -3.01 16 3 C -0.11 -1.92 9.68 -39.67 -0.38 -2.31 16 4 C -0.15 -2.85 10.06 -39.30 -0.40 -3.25 16 5 C 0.08 1.87 7.04 -38.96 -0.27 1.60 16 6 C -0.12 -2.86 5.68 -104.10 -0.59 -3.45 16 7 C -0.06 -1.40 9.58 -39.72 -0.38 -1.78 16 8 C 0.05 1.13 2.91 -91.56 -0.27 0.87 16 9 H 0.09 2.61 6.79 -51.93 -0.35 2.25 16 10 C -0.51 -13.53 8.27 -34.44 -0.28 -13.81 16 11 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 12 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 13 N -0.89 -24.53 12.67 55.43 0.70 -23.83 16 14 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.07 1.57 3.79 -25.83 -0.10 1.47 16 19 H 0.07 1.64 7.92 -51.93 -0.41 1.23 16 20 C -0.13 -2.58 9.60 37.16 0.36 -2.23 16 21 O -0.32 -7.29 10.81 -20.19 -0.22 -7.51 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 24 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 27 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.06 1.12 8.11 -51.92 -0.42 0.70 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 266.02 15.07 4.01 4.01 Total: -1.00 -28.10 266.02 -7.31 -35.40 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.11 Total: 1.63 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -2.67 Total: -25.19 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.70 Total: -23.83 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.22 Total: -7.51 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.10 -7.31 -35.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.244 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds