Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38294 * 120.11399 * 2 1 4 4 C 1.37937 * 120.34773 * 179.60085 * 3 2 1 5 5 C 1.39289 * 120.23787 * 0.51928 * 4 3 2 6 6 C 1.38874 * 118.87830 * 0.06343 * 5 4 3 7 7 C 1.37743 * 120.79031 * 359.50930 * 6 5 4 8 8 C 1.51648 * 107.03878 * 179.05269 * 6 5 4 9 9 H 1.08999 * 110.93769 * 102.82807 * 8 6 5 10 10 C 1.50700 * 110.93715 * 226.50916 * 8 6 5 11 11 H 1.07996 * 120.00196 * 55.10382 * 10 8 6 12 12 C 1.37879 * 119.99775 * 235.09918 * 10 8 6 13 13 N 1.31514 * 120.00225 * 5.78276 * 12 10 8 14 14 Si 1.86798 * 120.00087 * 185.78596 * 12 10 8 15 15 H 1.48502 * 109.47646 * 89.99653 * 14 12 10 16 16 H 1.48500 * 109.47120 * 210.00211 * 14 12 10 17 17 H 1.48502 * 109.46929 * 329.99916 * 14 12 10 18 18 C 1.54704 * 101.92915 * 344.66746 * 8 6 5 19 19 H 1.09007 * 110.90775 * 266.87881 * 18 8 6 20 20 C 1.53000 * 110.74854 * 143.60257 * 18 8 6 21 21 O 1.36141 * 129.88436 * 180.31485 * 5 4 3 22 22 H 1.09006 * 109.47466 * 269.72153 * 1 2 3 23 23 H 1.09005 * 109.47225 * 149.72466 * 1 2 3 24 24 H 1.08996 * 109.47787 * 29.72134 * 1 2 3 25 25 H 1.07995 * 119.82319 * 359.85640 * 3 2 1 26 26 H 1.07993 * 119.87731 * 180.23709 * 4 3 2 27 27 H 1.07994 * 120.01327 * 180.31141 * 7 6 5 28 28 H 0.97002 * 120.00089 * 180.02562 * 13 12 10 29 29 H 1.09007 * 109.46869 * 305.18212 * 20 18 8 30 30 H 1.08999 * 109.47298 * 65.18227 * 20 18 8 31 31 H 1.09001 * 109.47333 * 185.18823 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2007 1.1963 0.0000 4 6 3.5801 1.2019 0.0083 5 6 4.2865 0.0014 0.0058 6 6 3.5786 -1.1933 -0.0064 7 6 2.2011 -1.1967 -0.0059 8 6 4.5994 -2.3144 -0.0302 9 1 4.7017 -2.7690 0.9552 10 6 4.2382 -3.3498 -1.0639 11 1 4.0817 -3.0556 -2.0911 12 6 4.1076 -4.6728 -0.6981 13 7 4.1856 -5.0154 0.5692 14 14 3.8200 -5.9785 -2.0026 15 1 5.1268 -6.4975 -2.4802 16 1 3.0273 -7.0920 -1.4220 17 1 3.0770 -5.3839 -3.1426 18 6 5.8912 -1.5623 -0.4289 19 1 6.0384 -1.5875 -1.5087 20 6 7.1050 -2.1481 0.2953 21 8 5.6295 -0.2212 0.0184 22 1 -0.3634 -0.0050 1.0277 23 1 -0.3634 -0.8875 -0.5181 24 1 -0.3634 0.8924 -0.5095 25 1 1.6598 2.1310 -0.0023 26 1 4.1142 2.1405 0.0121 27 1 1.6633 -2.1332 -0.0104 28 1 4.0941 -5.9462 0.8265 29 1 6.9243 -2.1423 1.3703 30 1 7.2688 -3.1722 -0.0400 31 1 7.9864 -1.5471 0.0718 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -39.347615 kcal Electronic energy + Delta-G solvation = -14534.780187 eV Core-core repulsion = 12166.176565 eV Total energy + Delta-G solvation = -2368.603622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.84005 -38.58508 -35.55309 -33.25228 -32.80585 -31.56118 -28.78806 -27.04335 -25.83429 -22.88446 -22.07269 -21.60082 -18.82792 -18.16660 -17.10015 -16.44716 -16.27377 -15.68529 -14.99477 -14.58069 -14.34722 -14.19962 -14.01196 -13.81019 -13.29433 -13.02676 -12.82845 -12.77426 -12.60111 -12.45672 -12.11337 -11.92905 -11.44988 -11.30371 -11.18402 -10.64826 -9.61223 -8.76690 -8.21050 -6.33914 0.55216 0.60797 1.38596 1.39840 1.50343 2.36038 2.52873 2.96318 3.03425 3.92165 4.11646 4.17885 4.23060 4.33626 4.46252 4.56901 4.63215 4.73358 4.91509 4.92835 4.99010 5.03537 5.19451 5.21875 5.38361 5.47384 5.53892 5.65231 5.77129 5.85168 5.92087 6.20411 6.48976 6.77941 7.32218 8.85398 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.011440 C = 0.008487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.165372 B = 2446.950612 C = 3298.466974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.143 4.143 5 C 0.055 3.945 6 C -0.159 4.159 7 C -0.089 4.089 8 C 0.039 3.961 9 H 0.057 0.943 10 C -0.520 4.520 11 H 0.049 0.951 12 C 0.025 3.975 13 N -0.919 5.919 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.270 1.270 18 C 0.072 3.928 19 H 0.070 0.930 20 C -0.123 4.123 21 O -0.328 6.328 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.165 0.835 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.267 0.733 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 8.656 -1.361 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.162 4.162 5 C 0.010 3.990 6 C -0.160 4.160 7 C -0.107 4.107 8 C 0.021 3.979 9 H 0.075 0.925 10 C -0.557 4.557 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.557 5.557 14 Si 0.782 3.218 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.194 1.194 18 C 0.017 3.983 19 H 0.087 0.913 20 C -0.180 4.180 21 O -0.243 6.243 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.183 0.817 26 H 0.161 0.839 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.057 8.625 -1.179 9.227 hybrid contribution 0.078 -1.338 -0.469 1.419 sum -2.979 7.288 -1.648 8.044 Atomic orbital electron populations 1.20704 0.88671 1.03373 1.02869 1.20175 0.97727 0.92072 1.02422 1.20989 0.92146 0.98500 0.99988 1.20514 0.94309 0.94856 1.06516 1.20053 0.83662 0.95429 0.99864 1.21736 0.96030 0.96187 1.02063 1.20304 0.92292 0.98092 1.00057 1.19239 0.88427 0.91616 0.98639 0.92454 1.20994 1.48497 0.92094 0.94135 0.93296 1.25748 0.93857 1.00650 0.97257 1.70020 1.50241 1.18450 1.16998 0.85560 0.78608 0.78427 0.79157 1.19419 1.20637 1.19409 1.23751 0.98282 0.78344 0.97967 0.91252 1.21617 0.95784 1.00823 0.99814 1.86637 1.20264 1.34643 1.82777 0.90509 0.92222 0.89291 0.81722 0.83883 0.88042 0.92401 0.93147 0.91004 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 10.02 71.23 0.71 -1.76 16 2 C -0.12 -4.23 5.89 -19.83 -0.12 -4.34 16 3 C -0.10 -3.01 9.68 22.21 0.21 -2.79 16 4 C -0.14 -5.06 10.06 22.45 0.23 -4.83 16 5 C 0.05 2.43 7.04 22.68 0.16 2.59 16 6 C -0.16 -7.77 5.68 -19.53 -0.11 -7.88 16 7 C -0.09 -3.93 9.58 22.18 0.21 -3.72 16 8 C 0.04 2.08 2.91 -11.40 -0.03 2.05 16 9 H 0.06 3.39 6.79 -2.39 -0.02 3.37 16 10 C -0.52 -28.78 8.27 25.60 0.21 -28.56 16 11 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 12 C 0.03 1.37 5.45 84.66 0.46 1.83 16 13 N -0.92 -52.81 12.67 21.45 0.27 -52.54 16 14 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 C 0.07 3.33 3.79 31.17 0.12 3.45 16 19 H 0.07 3.20 7.92 -2.38 -0.02 3.18 16 20 C -0.12 -4.93 9.60 71.98 0.69 -4.24 16 21 O -0.33 -14.92 10.81 -95.15 -1.03 -15.95 16 22 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.06 1.52 8.09 -2.38 -0.02 1.50 16 24 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 25 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 26 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 27 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.05 2.04 8.11 -2.38 -0.02 2.02 16 30 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -62.99 266.02 5.12 -57.87 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.11 Total: 13.94 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: 2.75 Total: -48.21 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.27 Total: -52.54 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.03 Total: -15.95 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.99 5.12 -57.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.521 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds