Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38278 * 120.11622 * 2 1 4 4 C 1.37935 * 120.35283 * 179.88201 * 3 2 1 5 5 C 1.39283 * 120.23605 * 359.95741 * 4 3 2 6 6 C 1.38884 * 118.88082 * 0.35262 * 5 4 3 7 7 C 1.37749 * 120.77979 * 359.48914 * 6 5 4 8 8 C 1.51643 * 107.04207 * 179.47052 * 6 5 4 9 9 H 1.09003 * 110.93845 * 226.41971 * 8 6 5 10 10 C 1.50706 * 110.93735 * 102.77374 * 8 6 5 11 11 H 1.08002 * 119.99752 * 324.71410 * 10 8 6 12 12 C 1.37877 * 119.99834 * 144.71668 * 10 8 6 13 13 N 1.31511 * 119.99738 * 179.24476 * 12 10 8 14 14 Si 1.86797 * 119.99972 * 359.23677 * 12 10 8 15 15 H 1.48503 * 109.47295 * 266.92711 * 14 12 10 16 16 H 1.48502 * 109.46824 * 146.93000 * 14 12 10 17 17 H 1.48503 * 109.47403 * 26.93107 * 14 12 10 18 18 C 1.54705 * 101.92583 * 344.61614 * 8 6 5 19 19 H 1.09000 * 110.74649 * 266.96134 * 18 8 6 20 20 C 1.52995 * 110.74906 * 143.61120 * 18 8 6 21 21 O 1.36130 * 129.88470 * 181.01424 * 5 4 3 22 22 H 1.09004 * 109.47116 * 89.99824 * 1 2 3 23 23 H 1.09002 * 109.47413 * 209.99982 * 1 2 3 24 24 H 1.09001 * 109.47202 * 329.99781 * 1 2 3 25 25 H 1.08003 * 119.83041 * 359.86356 * 3 2 1 26 26 H 1.07999 * 119.88453 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.00609 * 180.32835 * 7 6 5 28 28 H 0.97003 * 120.00157 * 179.97438 * 13 12 10 29 29 H 1.08995 * 109.47176 * 54.63356 * 20 18 8 30 30 H 1.09004 * 109.47124 * 174.63362 * 20 18 8 31 31 H 1.09004 * 109.47149 * 294.62757 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1961 0.0000 4 6 3.5802 1.2018 0.0025 5 6 4.2865 0.0014 0.0058 6 6 3.5786 -1.1935 -0.0008 7 6 2.2011 -1.1967 0.0000 8 6 4.5994 -2.3148 -0.0085 9 1 4.3420 -3.0708 -0.7503 10 6 4.7330 -2.9309 1.3604 11 1 4.6462 -2.3125 2.2417 12 6 4.9661 -4.2838 1.4878 13 7 5.0974 -4.8189 2.6819 14 14 5.0950 -5.3568 -0.0359 15 1 3.7631 -5.9341 -0.3489 16 1 6.0643 -6.4541 0.2122 17 1 5.5602 -4.5351 -1.1821 18 6 5.8935 -1.5663 -0.4066 19 1 6.0436 -1.6017 -1.4856 20 6 7.1031 -2.1456 0.3297 21 8 5.6293 -0.2213 0.0271 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6599 2.1310 -0.0022 26 1 4.1144 2.1404 0.0020 27 1 1.6632 -2.1332 0.0002 28 1 5.2610 -5.7708 2.7716 29 1 7.1577 -3.2193 0.1501 30 1 8.0130 -1.6694 -0.0354 31 1 7.0003 -1.9608 1.3990 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = -16.531277 kcal Electronic energy + Delta-G solvation = -14658.937980 eV Core-core repulsion = 12291.323749 eV Total energy + Delta-G solvation = -2367.614232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.35032 -37.18117 -33.68739 -31.62192 -31.44786 -30.07830 -27.18804 -25.54493 -24.20658 -21.46237 -20.37400 -19.80804 -17.44048 -16.35929 -15.69373 -14.88840 -14.37505 -14.17462 -13.44426 -13.34118 -13.01766 -12.87575 -12.46806 -12.08038 -11.95030 -11.56188 -11.42165 -11.03410 -10.85810 -10.74920 -10.48882 -9.93404 -9.89043 -9.72710 -9.34971 -8.69944 -8.14339 -7.22571 -6.21755 -4.20778 2.00207 2.02039 3.15679 3.24531 3.26425 4.07933 4.26250 4.35819 5.02723 5.29521 5.33686 5.56576 5.71789 5.80693 5.86421 5.89349 5.93763 6.00565 6.21210 6.23981 6.32671 6.55448 6.61024 6.75490 6.88160 6.95858 7.14227 7.19820 7.31303 7.37748 7.52579 8.01197 8.38187 8.85160 9.37776 10.90535 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.011109 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.823684 B = 2519.903229 C = 3043.190874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.130 4.130 3 C -0.105 4.105 4 C -0.148 4.148 5 C 0.097 3.903 6 C -0.125 4.125 7 C -0.073 4.073 8 C 0.023 3.977 9 H 0.059 0.941 10 C -0.493 4.493 11 H 0.077 0.923 12 C 0.078 3.922 13 N -0.889 5.889 14 Si 0.868 3.132 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.262 1.262 18 C 0.069 3.931 19 H 0.058 0.942 20 C -0.119 4.119 21 O -0.306 6.306 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.267 0.733 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 6.814 -7.028 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C -0.123 4.123 4 C -0.167 4.167 5 C 0.052 3.948 6 C -0.126 4.126 7 C -0.092 4.092 8 C 0.004 3.996 9 H 0.077 0.923 10 C -0.531 4.531 11 H 0.096 0.904 12 C -0.125 4.125 13 N -0.526 5.526 14 Si 0.695 3.305 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.187 1.187 18 C 0.013 3.987 19 H 0.075 0.925 20 C -0.176 4.176 21 O -0.221 6.221 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.767 6.754 -6.843 10.327 hybrid contribution 0.058 -0.835 -0.685 1.082 sum -3.708 5.919 -7.529 10.270 Atomic orbital electron populations 1.20624 0.91673 1.02142 1.01397 1.19642 0.95499 0.92967 1.04873 1.20464 0.92719 0.97159 1.01992 1.20058 0.93392 0.95141 1.08128 1.19624 0.84157 0.94333 0.96728 1.21307 0.94656 0.95897 1.00751 1.20143 0.92414 0.97286 0.99314 1.19618 0.87870 0.92869 0.99233 0.92311 1.20587 1.49029 0.93338 0.90105 0.90447 1.25040 0.94280 0.97552 0.95665 1.69876 1.48100 1.12527 1.22082 0.87008 0.78720 0.80667 0.84147 1.20048 1.20926 1.18684 1.23720 0.99258 0.79582 0.96162 0.92454 1.21608 0.93580 0.99873 1.02546 1.86737 1.19344 1.33762 1.82219 0.92094 0.91923 0.92207 0.86358 0.86560 0.86427 0.92333 0.91404 0.94484 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.02 36.01 0.36 -0.96 16 2 C -0.13 -2.20 5.89 -104.57 -0.62 -2.81 16 3 C -0.11 -1.72 9.68 -39.68 -0.38 -2.10 16 4 C -0.15 -2.71 10.06 -39.30 -0.40 -3.11 16 5 C 0.10 2.10 7.04 -38.95 -0.27 1.83 16 6 C -0.13 -2.80 5.61 -104.10 -0.58 -3.38 16 7 C -0.07 -1.46 9.70 -39.72 -0.39 -1.84 16 8 C 0.02 0.55 2.62 -91.56 -0.24 0.31 16 9 H 0.06 1.37 5.19 -51.93 -0.27 1.10 16 10 C -0.49 -13.42 7.03 -34.44 -0.24 -13.66 16 11 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 12 C 0.08 2.12 5.15 -17.82 -0.09 2.03 16 13 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 14 Si 0.87 20.26 25.77 -169.99 -4.38 15.88 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.26 -5.76 6.53 56.52 0.37 -5.39 16 18 C 0.07 1.50 4.16 -25.84 -0.11 1.40 16 19 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.12 -2.50 8.59 37.16 0.32 -2.18 16 21 O -0.31 -6.89 10.81 -20.15 -0.22 -7.11 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 26 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.07 1.43 6.32 -51.93 -0.33 1.10 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.86 7.34 -51.93 -0.38 1.47 16 LS Contribution 256.83 15.07 3.87 3.87 Total: -1.00 -29.26 256.83 -6.54 -35.80 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.95 Total: 1.25 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.64 Total: -24.48 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.77 Total: -25.21 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.22 Total: -7.11 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.38 Total: 15.88 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.26 -6.54 -35.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.267 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds