Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38278 * 120.11622 * 2 1 4 4 C 1.37935 * 120.35283 * 179.88201 * 3 2 1 5 5 C 1.39283 * 120.23605 * 359.95741 * 4 3 2 6 6 C 1.38884 * 118.88082 * 0.35262 * 5 4 3 7 7 C 1.37749 * 120.77979 * 359.48914 * 6 5 4 8 8 C 1.51643 * 107.04207 * 179.47052 * 6 5 4 9 9 H 1.09003 * 110.93845 * 226.41971 * 8 6 5 10 10 C 1.50706 * 110.93735 * 102.77374 * 8 6 5 11 11 H 1.08002 * 119.99752 * 324.71410 * 10 8 6 12 12 C 1.37877 * 119.99834 * 144.71668 * 10 8 6 13 13 N 1.31511 * 119.99738 * 179.24476 * 12 10 8 14 14 Si 1.86797 * 119.99972 * 359.23677 * 12 10 8 15 15 H 1.48503 * 109.47295 * 266.92711 * 14 12 10 16 16 H 1.48502 * 109.46824 * 146.93000 * 14 12 10 17 17 H 1.48503 * 109.47403 * 26.93107 * 14 12 10 18 18 C 1.54705 * 101.92583 * 344.61614 * 8 6 5 19 19 H 1.09000 * 110.74649 * 266.96134 * 18 8 6 20 20 C 1.52995 * 110.74906 * 143.61120 * 18 8 6 21 21 O 1.36130 * 129.88470 * 181.01424 * 5 4 3 22 22 H 1.09004 * 109.47116 * 89.99824 * 1 2 3 23 23 H 1.09002 * 109.47413 * 209.99982 * 1 2 3 24 24 H 1.09001 * 109.47202 * 329.99781 * 1 2 3 25 25 H 1.08003 * 119.83041 * 359.86356 * 3 2 1 26 26 H 1.07999 * 119.88453 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.00609 * 180.32835 * 7 6 5 28 28 H 0.97003 * 120.00157 * 179.97438 * 13 12 10 29 29 H 1.08995 * 109.47176 * 54.63356 * 20 18 8 30 30 H 1.09004 * 109.47124 * 174.63362 * 20 18 8 31 31 H 1.09004 * 109.47149 * 294.62757 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1961 0.0000 4 6 3.5802 1.2018 0.0025 5 6 4.2865 0.0014 0.0058 6 6 3.5786 -1.1935 -0.0008 7 6 2.2011 -1.1967 0.0000 8 6 4.5994 -2.3148 -0.0085 9 1 4.3420 -3.0708 -0.7503 10 6 4.7330 -2.9309 1.3604 11 1 4.6462 -2.3125 2.2417 12 6 4.9661 -4.2838 1.4878 13 7 5.0974 -4.8189 2.6819 14 14 5.0950 -5.3568 -0.0359 15 1 3.7631 -5.9341 -0.3489 16 1 6.0643 -6.4541 0.2122 17 1 5.5602 -4.5351 -1.1821 18 6 5.8935 -1.5663 -0.4066 19 1 6.0436 -1.6017 -1.4856 20 6 7.1031 -2.1456 0.3297 21 8 5.6293 -0.2213 0.0271 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6599 2.1310 -0.0022 26 1 4.1144 2.1404 0.0020 27 1 1.6632 -2.1332 0.0002 28 1 5.2610 -5.7708 2.7716 29 1 7.1577 -3.2193 0.1501 30 1 8.0130 -1.6694 -0.0354 31 1 7.0003 -1.9608 1.3990 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = -34.315868 kcal Electronic energy + Delta-G solvation = -14659.709178 eV Core-core repulsion = 12291.323749 eV Total energy + Delta-G solvation = -2368.385429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.95245 -38.64711 -35.60516 -33.44602 -32.90847 -31.60859 -28.89178 -26.95665 -26.04973 -22.95695 -21.92307 -21.53631 -19.40536 -17.98452 -17.37864 -16.53259 -16.04303 -15.82096 -15.01704 -14.74495 -14.69835 -14.29972 -14.06537 -13.82407 -13.43485 -12.98188 -12.80422 -12.67779 -12.62434 -12.39670 -12.06023 -11.84986 -11.60223 -11.39246 -11.14360 -10.77076 -9.65986 -8.75670 -8.33753 -6.38059 0.52936 0.54250 1.30875 1.32846 1.43066 2.28549 2.49445 2.86325 2.99864 3.80724 4.05476 4.10254 4.17588 4.23827 4.39622 4.48442 4.59814 4.68109 4.80129 4.90455 4.93787 4.97841 5.10014 5.22187 5.32246 5.39935 5.49164 5.57440 5.70978 5.78546 5.92310 6.21377 6.46134 6.63453 7.24014 8.82920 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.011109 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.823684 B = 2519.903229 C = 3043.190874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.123 4.123 3 C -0.095 4.095 4 C -0.147 4.147 5 C 0.064 3.936 6 C -0.161 4.161 7 C -0.094 4.094 8 C 0.017 3.983 9 H 0.063 0.937 10 C -0.489 4.489 11 H 0.020 0.980 12 C 0.026 3.974 13 N -0.941 5.941 14 Si 0.931 3.069 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.237 1.237 18 C 0.068 3.932 19 H 0.085 0.915 20 C -0.115 4.115 21 O -0.322 6.322 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.164 0.836 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.269 0.731 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 8.189 -9.258 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.165 4.165 5 C 0.019 3.981 6 C -0.162 4.162 7 C -0.112 4.112 8 C -0.002 4.002 9 H 0.081 0.919 10 C -0.527 4.527 11 H 0.039 0.961 12 C -0.172 4.172 13 N -0.579 5.579 14 Si 0.754 3.246 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.160 1.160 18 C 0.012 3.988 19 H 0.102 0.898 20 C -0.172 4.172 21 O -0.237 6.237 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.182 0.818 26 H 0.159 0.841 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.997 8.154 -9.086 13.191 hybrid contribution 0.328 -1.115 0.082 1.165 sum -4.669 7.039 -9.003 12.345 Atomic orbital electron populations 1.20714 0.88451 1.03374 1.03121 1.20152 0.97801 0.92030 1.02301 1.21014 0.92054 0.98762 0.99461 1.20519 0.94423 0.94935 1.06655 1.20018 0.83664 0.95479 0.98953 1.21361 0.95649 0.95656 1.03496 1.20402 0.91802 0.98830 1.00198 1.19575 0.89935 0.93749 0.96892 0.91931 1.20526 1.48769 0.93085 0.90283 0.96141 1.25838 0.93739 0.98790 0.98863 1.70027 1.50079 1.13054 1.24777 0.85990 0.79071 0.78830 0.80731 1.19405 1.20425 1.16045 1.23742 0.98141 0.79296 0.97600 0.89776 1.21546 0.95136 1.00059 1.00413 1.86678 1.20308 1.33720 1.82988 0.89968 0.92016 0.89740 0.81836 0.84114 0.86542 0.92172 0.91675 0.91098 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 10.02 71.24 0.71 -1.49 16 2 C -0.12 -3.82 5.89 -19.83 -0.12 -3.94 16 3 C -0.10 -2.75 9.68 22.21 0.21 -2.54 16 4 C -0.15 -5.02 10.06 22.45 0.23 -4.80 16 5 C 0.06 2.74 7.04 22.68 0.16 2.90 16 6 C -0.16 -7.24 5.61 -19.52 -0.11 -7.35 16 7 C -0.09 -3.70 9.70 22.18 0.22 -3.48 16 8 C 0.02 0.84 2.62 -11.40 -0.03 0.81 16 9 H 0.06 2.89 5.19 -2.39 -0.01 2.88 16 10 C -0.49 -27.89 7.03 25.60 0.18 -27.71 16 11 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 12 C 0.03 1.47 5.15 84.66 0.44 1.90 16 13 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 14 Si 0.93 41.94 25.77 68.60 1.77 43.70 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.24 -9.65 6.53 99.48 0.65 -9.00 16 18 C 0.07 2.96 4.16 31.17 0.13 3.09 16 19 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 20 C -0.11 -4.82 8.59 71.98 0.62 -4.20 16 21 O -0.32 -14.56 10.81 -95.03 -1.03 -15.58 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 24 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 25 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 26 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.06 2.73 6.32 -2.39 -0.02 2.72 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.04 2.20 7.34 -2.38 -0.02 2.19 16 Total: -1.00 -66.99 256.83 4.73 -62.25 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.06 Total: 13.52 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 2.64 Total: -46.81 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.30 Total: -57.08 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.03 Total: -15.58 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.77 Total: 43.70 kcal Total: -66.99 4.73 -62.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.939 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds