Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38285 * 120.12036 * 2 1 4 4 C 1.37927 * 120.35433 * 180.18731 * 3 2 1 5 5 C 1.39295 * 120.23875 * 0.02562 * 4 3 2 6 6 C 1.38874 * 118.87369 * 359.69462 * 5 4 3 7 7 C 1.37740 * 120.78843 * 0.41523 * 6 5 4 8 8 C 1.51640 * 107.03384 * 180.45442 * 6 5 4 9 9 H 1.09000 * 110.94245 * 133.86587 * 8 6 5 10 10 C 1.50702 * 110.94856 * 257.52290 * 8 6 5 11 11 H 1.08005 * 119.99324 * 34.39183 * 10 8 6 12 12 C 1.37870 * 120.00334 * 214.38872 * 10 8 6 13 13 N 1.31519 * 120.00187 * 353.13457 * 12 10 8 14 14 Si 1.86799 * 119.99874 * 172.85832 * 12 10 8 15 15 H 1.48498 * 109.47158 * 60.00310 * 14 12 10 16 16 H 1.48501 * 109.47022 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47295 * 300.00120 * 14 12 10 18 18 C 1.54713 * 101.90631 * 15.67614 * 8 6 5 19 19 H 1.09004 * 110.74369 * 92.96826 * 18 8 6 20 20 C 1.52995 * 110.74911 * 216.31347 * 18 8 6 21 21 O 1.36129 * 129.87156 * 179.46840 * 5 4 3 22 22 H 1.08995 * 109.47286 * 90.00026 * 1 2 3 23 23 H 1.08999 * 109.47460 * 210.00550 * 1 2 3 24 24 H 1.09004 * 109.47154 * 329.99950 * 1 2 3 25 25 H 1.08002 * 119.82142 * 0.16597 * 3 2 1 26 26 H 1.08001 * 119.87944 * 179.97438 * 4 3 2 27 27 H 1.08007 * 120.00913 * 179.67888 * 7 6 5 28 28 H 0.96997 * 119.99758 * 354.21808 * 13 12 10 29 29 H 1.09002 * 109.47042 * 66.73783 * 20 18 8 30 30 H 1.09006 * 109.47079 * 186.73696 * 20 18 8 31 31 H 1.08998 * 109.47167 * 306.73711 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2018 -0.0039 5 6 4.2866 0.0012 -0.0084 6 6 3.5786 -1.1935 -0.0024 7 6 2.2012 -1.1967 -0.0008 8 6 4.5994 -2.3148 0.0022 9 1 4.3404 -3.0744 0.7398 10 6 4.7364 -2.9243 -1.3692 11 1 4.6374 -2.3043 -2.2480 12 6 4.9883 -4.2733 -1.5021 13 7 5.2428 -5.0027 -0.4377 14 14 4.9604 -5.0665 -3.1931 15 1 5.9821 -4.4239 -4.0582 16 1 5.2609 -6.5151 -3.0653 17 1 3.6165 -4.8909 -3.8002 18 6 5.8923 -1.5677 0.4070 19 1 6.0392 -1.6072 1.4864 20 6 7.1041 -2.1443 -0.3278 21 8 5.6295 -0.2211 -0.0224 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6600 2.1309 0.0027 26 1 4.1144 2.1404 -0.0043 27 1 1.6632 -2.1333 -0.0013 28 1 5.3363 -4.5788 0.4297 29 1 7.0164 -1.9343 -1.3938 30 1 8.0149 -1.6869 0.0589 31 1 7.1444 -3.2223 -0.1719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = -23.031726 kcal Electronic energy + Delta-G solvation = -14654.762178 eV Core-core repulsion = 12286.866066 eV Total energy + Delta-G solvation = -2367.896112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31428 -37.17012 -34.04418 -31.55742 -31.06082 -29.93836 -26.77230 -25.41637 -24.09346 -21.44624 -20.43638 -20.22473 -17.30132 -16.03486 -15.93358 -14.70069 -14.47190 -13.81567 -13.49978 -13.27257 -13.05531 -12.95511 -12.35619 -12.12230 -11.82167 -11.43529 -11.33494 -10.98690 -10.80268 -10.55288 -10.22217 -10.13282 -9.82837 -9.70422 -8.99396 -8.51779 -8.10638 -7.21901 -6.49600 -4.21686 2.00732 2.03071 3.38036 3.39319 3.58109 4.11124 4.33370 4.47840 5.13850 5.31560 5.33357 5.57812 5.72665 5.84639 5.88984 5.92042 5.98651 6.04612 6.21877 6.26891 6.38563 6.65199 6.66838 6.87295 6.93246 7.03320 7.15610 7.24677 7.36426 7.40423 7.94056 8.07649 8.31175 8.68819 9.45776 10.85332 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.010740 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.112833 B = 2606.552772 C = 3214.874188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.150 4.150 5 C 0.095 3.905 6 C -0.124 4.124 7 C -0.075 4.075 8 C 0.040 3.960 9 H 0.062 0.938 10 C -0.572 4.572 11 H 0.052 0.948 12 C 0.028 3.972 13 N -0.903 5.903 14 Si 1.064 2.936 15 H -0.286 1.286 16 H -0.281 1.281 17 H -0.286 1.286 18 C 0.069 3.931 19 H 0.054 0.946 20 C -0.118 4.118 21 O -0.310 6.310 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.270 0.730 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 7.386 1.370 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C -0.125 4.125 4 C -0.169 4.169 5 C 0.049 3.951 6 C -0.125 4.125 7 C -0.093 4.093 8 C 0.021 3.979 9 H 0.080 0.920 10 C -0.609 4.609 11 H 0.071 0.929 12 C -0.177 4.177 13 N -0.539 5.539 14 Si 0.892 3.108 15 H -0.212 1.212 16 H -0.206 1.206 17 H -0.213 1.213 18 C 0.013 3.987 19 H 0.072 0.928 20 C -0.175 4.175 21 O -0.225 6.225 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.978 6.044 0.534 7.255 hybrid contribution -0.141 1.441 0.793 1.651 sum -4.119 7.485 1.327 8.646 Atomic orbital electron populations 1.20616 0.91691 1.01856 1.01603 1.19650 0.95476 0.92983 1.04938 1.20447 0.92704 0.97125 1.02261 1.20058 0.93408 0.95114 1.08288 1.19655 0.84240 0.94361 0.96807 1.21443 0.94751 0.96199 1.00145 1.20141 0.92487 0.97179 0.99517 1.19343 0.87027 0.92130 0.99418 0.91992 1.21571 1.53031 0.95876 0.90448 0.92921 1.25862 0.93019 0.93992 1.04832 1.70846 1.44063 1.38877 1.00092 0.83607 0.76846 0.76267 0.74114 1.21214 1.20636 1.21267 1.23780 0.99666 0.79267 0.96008 0.92802 1.21572 0.93273 1.01129 1.01487 1.86715 1.19290 1.34030 1.82423 0.91923 0.92078 0.92310 0.86404 0.86658 0.86548 0.91890 0.91178 0.94969 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.00 0.36 -0.98 16 2 C -0.13 -2.27 5.89 -104.56 -0.62 -2.89 16 3 C -0.11 -1.80 9.68 -39.68 -0.38 -2.19 16 4 C -0.15 -2.82 10.06 -39.30 -0.40 -3.22 16 5 C 0.10 2.12 7.04 -38.95 -0.27 1.85 16 6 C -0.12 -2.88 5.61 -104.11 -0.58 -3.47 16 7 C -0.08 -1.55 9.70 -39.72 -0.39 -1.93 16 8 C 0.04 0.99 2.81 -91.56 -0.26 0.73 16 9 H 0.06 1.61 6.59 -51.93 -0.34 1.27 16 10 C -0.57 -15.40 6.53 -34.44 -0.22 -15.62 16 11 H 0.05 1.49 7.82 -52.48 -0.41 1.08 16 12 C 0.03 0.75 4.95 -17.82 -0.09 0.66 16 13 N -0.90 -25.32 13.13 55.43 0.73 -24.59 16 14 Si 1.06 24.27 29.91 -169.99 -5.08 19.18 16 15 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.07 1.58 4.17 -25.83 -0.11 1.47 16 19 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.12 -2.58 8.57 37.16 0.32 -2.26 16 21 O -0.31 -7.24 10.81 -20.15 -0.22 -7.46 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 26 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 27 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 28 H 0.27 7.47 6.56 -40.82 -0.27 7.20 16 29 H 0.07 1.63 7.41 -51.93 -0.39 1.24 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.86 7.03 -51.93 -0.37 1.49 16 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -28.74 260.36 -7.23 -35.97 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.94 Total: 0.83 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -2.64 Total: -27.85 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.73 Total: -24.59 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.22 Total: -7.46 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.74 -7.23 -35.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.937 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds