Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38285 * 120.12036 * 2 1 4 4 C 1.37927 * 120.35433 * 180.18731 * 3 2 1 5 5 C 1.39295 * 120.23875 * 0.02562 * 4 3 2 6 6 C 1.38874 * 118.87369 * 359.69462 * 5 4 3 7 7 C 1.37740 * 120.78843 * 0.41523 * 6 5 4 8 8 C 1.51640 * 107.03384 * 180.45442 * 6 5 4 9 9 H 1.09000 * 110.94245 * 133.86587 * 8 6 5 10 10 C 1.50702 * 110.94856 * 257.52290 * 8 6 5 11 11 H 1.08005 * 119.99324 * 34.39183 * 10 8 6 12 12 C 1.37870 * 120.00334 * 214.38872 * 10 8 6 13 13 N 1.31519 * 120.00187 * 353.13457 * 12 10 8 14 14 Si 1.86799 * 119.99874 * 172.85832 * 12 10 8 15 15 H 1.48498 * 109.47158 * 60.00310 * 14 12 10 16 16 H 1.48501 * 109.47022 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47295 * 300.00120 * 14 12 10 18 18 C 1.54713 * 101.90631 * 15.67614 * 8 6 5 19 19 H 1.09004 * 110.74369 * 92.96826 * 18 8 6 20 20 C 1.52995 * 110.74911 * 216.31347 * 18 8 6 21 21 O 1.36129 * 129.87156 * 179.46840 * 5 4 3 22 22 H 1.08995 * 109.47286 * 90.00026 * 1 2 3 23 23 H 1.08999 * 109.47460 * 210.00550 * 1 2 3 24 24 H 1.09004 * 109.47154 * 329.99950 * 1 2 3 25 25 H 1.08002 * 119.82142 * 0.16597 * 3 2 1 26 26 H 1.08001 * 119.87944 * 179.97438 * 4 3 2 27 27 H 1.08007 * 120.00913 * 179.67888 * 7 6 5 28 28 H 0.96997 * 119.99758 * 354.21808 * 13 12 10 29 29 H 1.09002 * 109.47042 * 66.73783 * 20 18 8 30 30 H 1.09006 * 109.47079 * 186.73696 * 20 18 8 31 31 H 1.08998 * 109.47167 * 306.73711 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2018 -0.0039 5 6 4.2866 0.0012 -0.0084 6 6 3.5786 -1.1935 -0.0024 7 6 2.2012 -1.1967 -0.0008 8 6 4.5994 -2.3148 0.0022 9 1 4.3404 -3.0744 0.7398 10 6 4.7364 -2.9243 -1.3692 11 1 4.6374 -2.3043 -2.2480 12 6 4.9883 -4.2733 -1.5021 13 7 5.2428 -5.0027 -0.4377 14 14 4.9604 -5.0665 -3.1931 15 1 5.9821 -4.4239 -4.0582 16 1 5.2609 -6.5151 -3.0653 17 1 3.6165 -4.8909 -3.8002 18 6 5.8923 -1.5677 0.4070 19 1 6.0392 -1.6072 1.4864 20 6 7.1041 -2.1443 -0.3278 21 8 5.6295 -0.2211 -0.0224 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6600 2.1309 0.0027 26 1 4.1144 2.1404 -0.0043 27 1 1.6632 -2.1333 -0.0013 28 1 5.3363 -4.5788 0.4297 29 1 7.0164 -1.9343 -1.3938 30 1 8.0149 -1.6869 0.0589 31 1 7.1444 -3.2223 -0.1719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = -38.823393 kcal Electronic energy + Delta-G solvation = -14655.446956 eV Core-core repulsion = 12286.866066 eV Total energy + Delta-G solvation = -2368.580890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99240 -38.70267 -36.00149 -33.02876 -32.84583 -31.57931 -28.45097 -26.90638 -26.06191 -23.00031 -22.28511 -21.77840 -19.18904 -17.73465 -17.70924 -16.33457 -16.02909 -15.67185 -15.06535 -14.89528 -14.69541 -14.35593 -13.99366 -13.87907 -13.32792 -12.92267 -12.82129 -12.63719 -12.56483 -12.21909 -11.98028 -11.86854 -11.70407 -11.37266 -10.87805 -10.56366 -9.71015 -8.87916 -8.58763 -6.36276 0.47272 0.49842 1.51807 1.56708 1.77683 2.44579 2.51037 2.84869 3.10262 3.78854 4.02324 4.06478 4.11984 4.20988 4.36613 4.46423 4.56627 4.64855 4.81605 4.87917 4.89785 4.94168 5.10424 5.18479 5.29178 5.41354 5.45675 5.66609 5.75215 5.86430 5.93501 6.11251 6.39108 6.55578 7.36972 8.71264 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.010740 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.112833 B = 2606.552772 C = 3214.874188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.145 4.145 5 C 0.060 3.940 6 C -0.160 4.160 7 C -0.096 4.096 8 C 0.032 3.968 9 H 0.036 0.964 10 C -0.575 4.575 11 H 0.032 0.968 12 C -0.011 4.011 13 N -0.923 5.923 14 Si 1.104 2.896 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.276 1.276 18 C 0.070 3.930 19 H 0.065 0.935 20 C -0.107 4.107 21 O -0.322 6.322 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.167 0.833 26 H 0.142 0.858 27 H 0.110 0.890 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 9.423 0.979 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.113 4.113 4 C -0.164 4.164 5 C 0.016 3.984 6 C -0.161 4.161 7 C -0.114 4.114 8 C 0.013 3.987 9 H 0.055 0.945 10 C -0.613 4.613 11 H 0.050 0.950 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.926 3.074 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.202 1.202 18 C 0.014 3.986 19 H 0.083 0.917 20 C -0.165 4.165 21 O -0.237 6.237 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.184 0.816 26 H 0.160 0.840 27 H 0.128 0.872 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.440 8.101 0.153 9.759 hybrid contribution 0.196 0.924 0.965 1.350 sum -5.244 9.025 1.118 10.497 Atomic orbital electron populations 1.20714 0.88306 1.03646 1.02945 1.20163 0.97858 0.91898 1.02113 1.21024 0.91981 0.98768 0.99533 1.20536 0.94459 0.94817 1.06542 1.20044 0.83644 0.95489 0.99269 1.21451 0.95755 0.95857 1.03054 1.20358 0.91780 0.98662 1.00630 1.19270 0.89143 0.92525 0.97729 0.94548 1.21615 1.52924 0.95975 0.90752 0.94997 1.27020 0.92278 0.94678 1.07147 1.70935 1.45868 1.38978 1.00194 0.83091 0.77667 0.75627 0.70975 1.19771 1.20440 1.20170 1.23696 0.98870 0.79330 0.96714 0.91687 1.21445 0.94468 1.00231 1.00318 1.86652 1.20369 1.33569 1.83135 0.90618 0.91710 0.89234 0.81579 0.83997 0.87177 0.92877 0.93020 0.91854 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 10.02 71.24 0.71 -1.53 16 2 C -0.12 -3.85 5.89 -19.83 -0.12 -3.97 16 3 C -0.10 -2.81 9.68 22.21 0.21 -2.59 16 4 C -0.15 -5.08 10.06 22.45 0.23 -4.86 16 5 C 0.06 2.69 7.04 22.68 0.16 2.85 16 6 C -0.16 -7.59 5.61 -19.53 -0.11 -7.70 16 7 C -0.10 -3.95 9.70 22.18 0.22 -3.74 16 8 C 0.03 1.68 2.81 -11.40 -0.03 1.65 16 9 H 0.04 2.02 6.59 -2.39 -0.02 2.01 16 10 C -0.58 -32.14 6.53 25.60 0.17 -31.98 16 11 H 0.03 1.87 7.82 -2.91 -0.02 1.85 16 12 C -0.01 -0.62 4.95 84.65 0.42 -0.21 16 13 N -0.92 -53.45 13.13 21.45 0.28 -53.17 16 14 Si 1.10 49.46 29.91 68.60 2.05 51.51 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 18 C 0.07 3.30 4.17 31.18 0.13 3.43 16 19 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 20 C -0.11 -4.83 8.57 71.98 0.62 -4.21 16 21 O -0.32 -15.20 10.81 -95.02 -1.03 -16.23 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 24 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 25 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 27 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 28 H 0.26 15.15 6.56 -92.71 -0.61 14.54 16 29 H 0.05 2.46 7.41 -2.39 -0.02 2.45 16 30 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.06 3.04 7.03 -2.39 -0.02 3.02 16 Total: -1.00 -64.04 260.36 5.18 -58.86 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.27 Total: 11.87 kcal Atomic # 6 Polarization: -55.45 SS G_CDS: 2.60 Total: -52.85 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.28 Total: -53.17 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.03 Total: -16.23 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Total: -64.04 5.18 -58.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.034 kcal (2) G-P(sol) polarization free energy of solvation -64.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds