Wall clock time and date at job start Mon Mar 30 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99611 * 2 1 4 4 H 1.48496 * 109.47133 * 270.00153 * 3 2 1 5 5 H 1.48501 * 109.46814 * 30.00376 * 3 2 1 6 6 H 1.48498 * 109.46624 * 150.00006 * 3 2 1 7 7 C 1.37874 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47313 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.26898 * 304.37620 * 10 9 7 12 12 C 1.54343 * 110.38981 * 182.24882 * 10 9 7 13 13 C 1.54336 * 102.39609 * 214.66320 * 12 10 9 14 14 C 1.51390 * 105.17404 * 26.37265 * 13 12 10 15 15 C 1.38544 * 130.32059 * 162.82436 * 14 13 12 16 16 C 1.38002 * 120.29035 * 180.02562 * 15 14 13 17 17 C 1.38744 * 119.88079 * 359.96114 * 16 15 14 18 18 O 1.35902 * 120.09720 * 180.29060 * 17 16 15 19 19 C 1.38605 * 119.81249 * 0.02562 * 17 16 15 20 20 C 1.38261 * 109.74166 * 342.79103 * 14 13 12 21 21 H 0.96998 * 120.00282 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47225 * 59.99618 * 9 7 2 23 23 H 1.09006 * 109.47360 * 300.00107 * 9 7 2 24 24 H 1.09005 * 110.81673 * 332.89118 * 12 10 9 25 25 H 1.08995 * 110.81960 * 96.43274 * 12 10 9 26 26 H 1.09006 * 110.30020 * 145.29209 * 13 12 10 27 27 H 1.09002 * 110.30390 * 267.44087 * 13 12 10 28 28 H 1.08002 * 119.85677 * 359.97438 * 15 14 13 29 29 H 1.08006 * 120.06004 * 179.97438 * 16 15 14 30 30 H 0.96695 * 114.00243 * 269.73113 * 18 17 16 31 31 H 1.07997 * 119.90989 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 1 2.9302 -3.5734 -0.8448 12 6 1.4961 -5.0101 -0.0594 13 6 2.3923 -5.9246 0.8023 14 6 3.1012 -4.9935 1.7627 15 6 3.7676 -5.2646 2.9467 16 6 4.3475 -4.2417 3.6691 17 6 4.2638 -2.9359 3.2077 18 8 4.8383 -1.9259 3.9125 19 6 3.5972 -2.6651 2.0230 20 6 3.0169 -3.6932 1.3006 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5562 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 0.5014 -4.9195 0.3772 25 1 1.4387 -5.3777 -1.0839 26 1 1.7829 -6.6422 1.3518 27 1 3.1166 -6.4442 0.1750 28 1 3.8329 -6.2809 3.3064 29 1 4.8657 -4.4572 4.5919 30 1 4.2526 -1.5193 4.5656 31 1 3.5315 -1.6493 1.6621 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:22 Heat of formation + Delta-G solvation = -54.506980 kcal Electronic energy + Delta-G solvation = -14429.930991 eV Core-core repulsion = 12060.670010 eV Total energy + Delta-G solvation = -2369.260982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19871 -38.78363 -36.05074 -34.86036 -32.59031 -30.59065 -28.97896 -27.23708 -24.07451 -23.56881 -21.87714 -21.02008 -18.78150 -18.34348 -17.03933 -16.79816 -16.36195 -15.91846 -15.59986 -14.62940 -14.48679 -14.39538 -13.59571 -13.34974 -13.19472 -13.04194 -12.81100 -12.42795 -12.33496 -12.19175 -12.09891 -11.72198 -11.43123 -10.97808 -10.91322 -10.51785 -9.60184 -9.15803 -8.19742 -6.27090 0.39388 0.55392 1.36090 1.36531 1.47575 2.38440 2.77140 3.13199 3.37387 3.71221 3.82344 4.23047 4.25121 4.35770 4.51153 4.55523 4.80486 4.87924 4.97164 5.07111 5.09911 5.22268 5.28282 5.35067 5.49012 5.53217 5.61061 5.75112 5.82709 5.93504 6.07719 6.26524 6.85838 6.89111 7.39260 8.92023 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.011029 C = 0.008097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.326121 B = 2538.061805 C = 3457.365874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.040 3.960 10 C -0.053 4.053 11 H 0.068 0.932 12 C -0.115 4.115 13 C -0.067 4.067 14 C -0.124 4.124 15 C -0.095 4.095 16 C -0.151 4.151 17 C 0.082 3.918 18 O -0.511 6.511 19 C -0.152 4.152 20 C -0.071 4.071 21 H 0.262 0.738 22 H -0.004 1.004 23 H -0.012 1.012 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.403 0.597 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -10.870 5.915 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.003 3.997 10 C -0.071 4.071 11 H 0.086 0.914 12 C -0.152 4.152 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.169 4.169 17 C 0.038 3.962 18 O -0.323 6.323 19 C -0.171 4.171 20 C -0.072 4.072 21 H 0.071 0.929 22 H 0.014 0.986 23 H 0.006 0.994 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.175 0.825 29 H 0.170 0.830 30 H 0.261 0.739 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.713 -10.882 5.575 13.948 hybrid contribution -0.354 1.768 0.137 1.808 sum 6.359 -9.114 5.712 12.495 Atomic orbital electron populations 1.70081 1.07540 1.27470 1.52130 1.25828 0.95609 1.02716 0.95224 0.85661 0.78780 0.79492 0.78492 1.19849 1.20722 1.19183 1.21578 0.93125 0.91996 1.49350 0.92348 1.18956 0.93650 0.92474 0.94600 1.20837 0.96259 0.96253 0.93760 0.91380 1.22390 0.98326 0.93408 1.01109 1.21023 0.97752 0.96225 0.95387 1.21083 0.99805 0.94875 0.96609 1.20758 0.96968 1.00186 0.93315 1.21460 1.02237 0.91334 1.01903 1.18526 0.96673 0.88547 0.92472 1.84725 1.42181 1.50190 1.55229 1.21503 0.98464 1.00671 0.96415 1.20590 0.96422 0.93533 0.96618 0.92923 0.98572 0.99406 0.92086 0.89243 0.88757 0.88583 0.82532 0.83020 0.73892 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.52 -29.71 7.25 25.60 0.19 -29.52 16 8 H 0.06 3.27 6.17 -2.91 -0.02 3.25 16 9 C 0.04 2.14 4.37 29.85 0.13 2.27 16 10 C -0.05 -2.23 2.86 -10.87 -0.03 -2.26 16 11 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 12 C -0.11 -3.73 6.59 31.50 0.21 -3.52 16 13 C -0.07 -1.76 6.77 30.52 0.21 -1.56 16 14 C -0.12 -4.00 6.14 -19.57 -0.12 -4.12 16 15 C -0.09 -2.58 10.03 22.29 0.22 -2.35 16 16 C -0.15 -4.37 9.99 22.33 0.22 -4.14 16 17 C 0.08 2.93 6.70 22.48 0.15 3.08 16 18 O -0.51 -16.60 13.51 -92.45 -1.25 -17.85 16 19 C -0.15 -6.53 9.14 22.40 0.20 -6.32 16 20 C -0.07 -2.92 5.57 -19.60 -0.11 -3.02 16 21 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 22 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 24 H 0.06 2.08 7.92 -2.38 -0.02 2.06 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 30 H 0.40 9.34 9.06 -74.06 -0.67 8.67 16 31 H 0.11 5.64 5.31 -2.91 -0.02 5.62 16 Total: -1.00 -68.63 260.26 3.26 -65.37 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.46 Total: 12.76 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 1.73 Total: -50.80 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.28 Total: -56.69 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.25 Total: -17.85 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -68.63 3.26 -65.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.865 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds