Wall clock time and date at job start Mon Mar 30 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38413 * 119.91621 * 89.99565 * 10 9 7 12 12 C 1.38259 * 119.90328 * 179.97438 * 11 10 9 13 13 C 1.38547 * 119.93906 * 359.97438 * 12 11 10 14 14 C 1.38003 * 120.29232 * 359.97438 * 13 12 11 15 15 C 1.38596 * 119.90846 * 269.72239 * 10 9 7 16 16 O 1.35900 * 120.09366 * 359.97438 * 15 10 9 17 17 C 1.51394 * 109.74183 * 179.97438 * 12 11 10 18 18 C 1.54341 * 105.17203 * 17.20400 * 17 12 11 19 19 C 1.51374 * 130.34177 * 359.97438 * 11 10 9 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.08000 * 119.85896 * 180.02562 * 13 12 11 24 24 H 1.08000 * 120.06673 * 180.02562 * 14 13 12 25 25 H 0.96705 * 113.99545 * 90.00346 * 16 15 10 26 26 H 1.08992 * 110.30331 * 136.13052 * 17 12 11 27 27 H 1.09001 * 110.29466 * 258.28345 * 17 12 11 28 28 H 1.08992 * 110.82016 * 91.85476 * 18 17 12 29 29 H 1.09001 * 110.81727 * 215.20703 * 18 17 12 30 30 H 1.08998 * 110.30660 * 281.72740 * 19 11 10 31 31 H 1.09002 * 110.30564 * 43.87785 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6780 -4.1698 1.1984 12 6 3.5760 -5.2210 1.1983 13 6 4.0252 -5.7466 -0.0024 14 6 3.5798 -5.2258 -1.2002 15 6 2.6758 -4.1731 -1.2027 16 8 2.2305 -3.6602 -2.3798 17 6 3.9081 -5.6100 2.6232 18 6 2.7917 -4.9817 3.4841 19 6 2.3451 -3.7814 2.6230 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 4.7264 -6.5681 -0.0009 24 1 3.9320 -5.6386 -2.1340 25 1 2.7729 -2.9375 -2.7241 26 1 3.9029 -6.6947 2.7301 27 1 4.8791 -5.2056 2.9090 28 1 1.9700 -5.6837 3.6254 29 1 3.1844 -4.6488 4.4448 30 1 2.8959 -2.8855 2.9094 31 1 1.2728 -3.6171 2.7296 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261017448.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:49 Heat of formation + Delta-G solvation = -58.571628 kcal Electronic energy + Delta-G solvation = -14430.400334 eV Core-core repulsion = 12060.963096 eV Total energy + Delta-G solvation = -2369.437238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19449 -38.56860 -35.58386 -35.27929 -33.19064 -29.46202 -29.16372 -27.66405 -25.21441 -22.78158 -21.96017 -20.80774 -18.81432 -18.39178 -17.20085 -16.68443 -16.32460 -16.13339 -15.40303 -14.55821 -14.41273 -14.15328 -13.71065 -13.44163 -13.15182 -12.84925 -12.81622 -12.56789 -12.46006 -12.19859 -11.93707 -11.81264 -11.66376 -11.45543 -10.89533 -10.60781 -9.37420 -9.11166 -8.20066 -6.34435 0.42245 0.57303 1.37562 1.40265 1.48676 2.37634 2.79576 3.10009 3.45040 3.71450 3.80013 4.21597 4.22689 4.33394 4.50256 4.51188 4.83442 4.86908 4.93175 5.01118 5.11117 5.20072 5.25211 5.32069 5.39609 5.43955 5.53014 5.70714 5.78632 5.98791 6.06502 6.18794 6.77632 6.95869 7.33861 8.89195 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.009957 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.449052 B = 2811.335189 C = 3387.890375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.068 3.932 10 C -0.092 4.092 11 C -0.108 4.108 12 C -0.113 4.113 13 C -0.109 4.109 14 C -0.146 4.146 15 C 0.074 3.926 16 O -0.509 6.509 17 C -0.070 4.070 18 C -0.110 4.110 19 C -0.082 4.082 20 H 0.265 0.735 21 H -0.003 1.003 22 H -0.003 1.003 23 H 0.157 0.843 24 H 0.148 0.852 25 H 0.396 0.604 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -10.282 3.831 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.093 4.093 11 C -0.108 4.108 12 C -0.114 4.114 13 C -0.127 4.127 14 C -0.164 4.164 15 C 0.030 3.970 16 O -0.320 6.320 17 C -0.106 4.106 18 C -0.148 4.148 19 C -0.119 4.119 20 H 0.074 0.926 21 H 0.015 0.985 22 H 0.015 0.985 23 H 0.174 0.826 24 H 0.166 0.834 25 H 0.253 0.747 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.262 -10.591 3.891 14.597 hybrid contribution -0.014 1.722 -0.487 1.790 sum 9.248 -8.869 3.403 13.257 Atomic orbital electron populations 1.70102 1.07822 1.27921 1.51191 1.25938 0.95704 1.03088 0.94568 0.85491 0.78264 0.78019 0.79230 1.19007 1.20697 1.19274 1.21195 0.92672 0.90925 1.51081 0.92977 1.17845 0.92760 0.91172 0.95103 1.20440 0.99128 0.96812 0.92883 1.20567 0.98668 0.97122 0.94487 1.21056 0.97145 0.96201 0.96949 1.20692 1.01052 1.01046 0.89894 1.21454 0.97438 0.97579 0.99934 1.18458 0.97343 0.96548 0.84657 1.84670 1.56677 1.54977 1.35644 1.21056 0.99402 1.02082 0.88098 1.22318 0.98555 0.95603 0.98297 1.21013 1.00623 0.99603 0.90685 0.92642 0.98520 0.98474 0.82576 0.83419 0.74696 0.88428 0.89015 0.90516 0.88436 0.91351 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.52 -30.27 9.09 25.60 0.23 -30.04 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.07 3.87 4.74 29.10 0.14 4.01 16 10 C -0.09 -4.38 5.09 -19.74 -0.10 -4.48 16 11 C -0.11 -4.41 6.00 -19.60 -0.12 -4.53 16 12 C -0.11 -3.64 6.14 -19.56 -0.12 -3.76 16 13 C -0.11 -3.18 10.03 22.29 0.22 -2.96 16 14 C -0.15 -4.84 9.99 22.34 0.22 -4.62 16 15 C 0.07 3.14 6.67 22.48 0.15 3.29 16 16 O -0.51 -21.51 12.54 -92.43 -1.16 -22.67 16 17 C -0.07 -1.61 6.77 30.52 0.21 -1.40 16 18 C -0.11 -2.73 7.08 31.50 0.22 -2.51 16 19 C -0.08 -2.98 6.27 30.51 0.19 -2.79 16 20 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 21 H 0.00 -0.21 7.28 -2.39 -0.02 -0.23 16 22 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 16 23 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 24 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 25 H 0.40 14.03 9.06 -74.05 -0.67 13.36 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.05 2.05 7.62 -2.39 -0.02 2.03 16 Total: -1.00 -70.41 264.36 3.32 -67.08 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.46 Total: 15.20 kcal Atomic # 6 Polarization: -50.73 SS G_CDS: 1.71 Total: -49.02 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.16 Total: -22.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.41 3.32 -67.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017448.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.511 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds