Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38294 * 119.82056 * 2 1 4 4 C 1.38352 * 119.76367 * 179.77364 * 3 2 1 5 5 C 1.37738 * 119.97584 * 0.23948 * 4 3 2 6 6 C 1.38882 * 120.79156 * 359.88862 * 5 4 3 7 7 C 1.37924 * 119.82437 * 179.97438 * 2 1 3 8 8 O 1.36133 * 111.22391 * 179.48629 * 6 5 4 9 9 C 1.43776 * 109.22717 * 19.39992 * 8 6 5 10 10 H 1.09003 * 110.74920 * 90.70097 * 9 8 6 11 11 C 1.52998 * 110.75247 * 213.86680 * 9 8 6 12 12 C 1.50699 * 109.47231 * 293.55162 * 11 9 8 13 13 H 1.07995 * 120.00317 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99708 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00105 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99842 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47120 * 60.00391 * 16 14 12 18 18 H 1.48504 * 109.46943 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47590 * 300.00072 * 16 14 12 20 20 C 1.51653 * 132.15683 * 181.28840 * 5 4 3 21 21 H 1.08991 * 109.47072 * 89.99846 * 1 2 3 22 22 H 1.09003 * 109.46771 * 210.00073 * 1 2 3 23 23 H 1.09004 * 109.46790 * 329.99396 * 1 2 3 24 24 H 1.08001 * 120.11733 * 359.79837 * 3 2 1 25 25 H 1.08002 * 120.00684 * 179.97438 * 4 3 2 26 26 H 1.07996 * 119.88330 * 0.04253 * 7 2 1 27 27 H 1.09009 * 109.46594 * 53.54643 * 11 9 8 28 28 H 1.08997 * 109.47321 * 173.54529 * 11 9 8 29 29 H 0.97004 * 119.99588 * 179.97438 * 15 14 12 30 30 H 1.09000 * 111.08228 * 45.55355 * 20 5 4 31 31 H 1.08998 * 110.74531 * 281.90468 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1998 0.0000 4 6 3.5783 1.1984 0.0047 5 6 4.2653 0.0046 0.0045 6 6 3.5859 -1.2066 0.0018 7 6 2.1930 -1.1966 0.0005 8 8 4.4515 -2.2572 -0.0094 9 6 5.7436 -1.8109 0.4362 10 1 5.8396 -1.9233 1.5162 11 6 6.8583 -2.5695 -0.2868 12 6 6.8257 -4.0198 0.1216 13 1 6.0844 -4.3657 0.8267 14 6 7.7423 -4.9049 -0.4049 15 7 8.6454 -4.4836 -1.2631 16 14 7.7025 -6.7024 0.1019 17 1 6.3876 -7.2898 -0.2604 18 1 8.7844 -7.4387 -0.6000 19 1 7.9042 -6.8077 1.5693 20 6 5.7470 -0.3170 0.0341 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5140 24 1 1.6538 2.1345 -0.0033 25 1 4.1193 2.1332 0.0043 26 1 1.6483 -2.1291 0.0003 27 1 6.7108 -2.4921 -1.3641 28 1 7.8232 -2.1385 -0.0202 29 1 9.2905 -5.1064 -1.6332 30 1 6.2643 0.2860 0.7804 31 1 6.1916 -0.1800 -0.9516 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = -24.582352 kcal Electronic energy + Delta-G solvation = -14017.850363 eV Core-core repulsion = 11649.887010 eV Total energy + Delta-G solvation = -2367.963352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57737 -37.45147 -33.35367 -32.80343 -31.08205 -29.67945 -28.26827 -25.45097 -23.13260 -22.05231 -20.99978 -20.16623 -16.55092 -16.45462 -16.16596 -15.29270 -14.80720 -14.24022 -13.86707 -13.49741 -13.17070 -12.60836 -12.47724 -12.24475 -12.06472 -11.65549 -11.40411 -11.36798 -11.21594 -10.70729 -10.57096 -10.35981 -10.17269 -9.43315 -9.14625 -8.48830 -8.39709 -7.63118 -6.02615 -4.04261 1.53646 1.70303 3.34982 3.38538 3.42344 3.84462 4.03372 4.45794 4.91280 4.97098 5.18602 5.24065 5.31146 5.36703 5.58149 5.59665 5.68629 5.72713 5.87958 5.90631 6.21069 6.25271 6.48649 6.57882 6.59864 6.73983 6.81507 6.98478 7.45158 7.58596 7.87817 7.94514 8.34023 8.99505 9.59222 11.08865 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050401 B = 0.006424 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.414736 B = 4357.371762 C = 4794.150354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.058 4.058 3 C -0.166 4.166 4 C -0.070 4.070 5 C -0.184 4.184 6 C 0.123 3.877 7 C -0.153 4.153 8 O -0.284 6.284 9 C 0.090 3.910 10 H 0.075 0.925 11 C 0.025 3.975 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.109 4.109 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 10.474 2.760 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.088 4.088 5 C -0.184 4.184 6 C 0.076 3.924 7 C -0.171 4.171 8 O -0.197 6.197 9 C 0.035 3.965 10 H 0.093 0.907 11 C -0.012 4.012 12 C -0.555 4.555 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.146 4.146 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.343 10.159 2.596 15.447 hybrid contribution 0.214 -0.871 0.202 0.919 sum -11.128 9.289 2.798 14.763 Atomic orbital electron populations 1.20755 0.91111 1.02572 1.02224 1.19502 0.95659 0.92279 0.98422 1.20750 0.93625 0.97185 1.06817 1.20234 0.93708 0.96316 0.98514 1.21010 0.96254 0.93824 1.07350 1.19853 0.91636 0.87485 0.93396 1.20076 0.90295 0.98346 1.08431 1.87052 1.20570 1.31459 1.80636 1.23810 0.82611 0.90950 0.99146 0.90747 1.19311 0.90629 0.95106 0.96166 1.21086 1.15010 0.93204 1.26150 0.92338 1.24992 0.95368 0.98996 0.95022 1.69943 1.18187 1.35266 1.30264 0.86592 0.77650 0.84739 0.78667 1.20161 1.21277 1.20205 1.21977 0.91859 0.97632 1.03181 0.91220 0.91568 0.91629 0.86184 0.86316 0.85845 0.95304 0.94221 0.92849 0.89939 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.00 36.01 0.36 -0.73 16 2 C -0.06 -0.80 5.87 -104.71 -0.61 -1.42 16 3 C -0.17 -2.19 9.71 -39.52 -0.38 -2.57 16 4 C -0.07 -1.01 10.03 -39.72 -0.40 -1.41 16 5 C -0.18 -3.22 6.27 -104.10 -0.65 -3.87 16 6 C 0.12 2.39 7.03 -38.95 -0.27 2.12 16 7 C -0.15 -2.52 9.70 -39.31 -0.38 -2.90 16 8 O -0.28 -6.49 10.64 -20.16 -0.21 -6.71 16 9 C 0.09 1.95 3.56 -25.84 -0.09 1.86 16 10 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 11 C 0.02 0.64 4.68 -27.88 -0.13 0.51 16 12 C -0.52 -14.80 8.95 -34.44 -0.31 -15.10 16 13 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.11 -1.96 6.65 -26.52 -0.18 -2.14 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 23 H 0.06 0.54 8.08 -51.93 -0.42 0.13 16 24 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.59 7.92 -51.93 -0.41 1.18 16 LS Contribution 267.72 15.07 4.03 4.03 Total: -1.00 -30.97 267.72 -7.79 -38.76 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.17 Total: -2.78 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.15 Total: -24.10 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.21 Total: -6.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.97 -7.79 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.181 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds