Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38294 * 119.82056 * 2 1 4 4 C 1.38352 * 119.76367 * 179.77364 * 3 2 1 5 5 C 1.37738 * 119.97584 * 0.23948 * 4 3 2 6 6 C 1.38882 * 120.79156 * 359.88862 * 5 4 3 7 7 C 1.37924 * 119.82437 * 179.97438 * 2 1 3 8 8 O 1.36133 * 111.22391 * 179.48629 * 6 5 4 9 9 C 1.43776 * 109.22717 * 19.39992 * 8 6 5 10 10 H 1.09003 * 110.74920 * 90.70097 * 9 8 6 11 11 C 1.52998 * 110.75247 * 213.86680 * 9 8 6 12 12 C 1.50699 * 109.47231 * 293.55162 * 11 9 8 13 13 H 1.07995 * 120.00317 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99708 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00105 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99842 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47120 * 60.00391 * 16 14 12 18 18 H 1.48504 * 109.46943 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47590 * 300.00072 * 16 14 12 20 20 C 1.51653 * 132.15683 * 181.28840 * 5 4 3 21 21 H 1.08991 * 109.47072 * 89.99846 * 1 2 3 22 22 H 1.09003 * 109.46771 * 210.00073 * 1 2 3 23 23 H 1.09004 * 109.46790 * 329.99396 * 1 2 3 24 24 H 1.08001 * 120.11733 * 359.79837 * 3 2 1 25 25 H 1.08002 * 120.00684 * 179.97438 * 4 3 2 26 26 H 1.07996 * 119.88330 * 0.04253 * 7 2 1 27 27 H 1.09009 * 109.46594 * 53.54643 * 11 9 8 28 28 H 1.08997 * 109.47321 * 173.54529 * 11 9 8 29 29 H 0.97004 * 119.99588 * 179.97438 * 15 14 12 30 30 H 1.09000 * 111.08228 * 45.55355 * 20 5 4 31 31 H 1.08998 * 110.74531 * 281.90468 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1998 0.0000 4 6 3.5783 1.1984 0.0047 5 6 4.2653 0.0046 0.0045 6 6 3.5859 -1.2066 0.0018 7 6 2.1930 -1.1966 0.0005 8 8 4.4515 -2.2572 -0.0094 9 6 5.7436 -1.8109 0.4362 10 1 5.8396 -1.9233 1.5162 11 6 6.8583 -2.5695 -0.2868 12 6 6.8257 -4.0198 0.1216 13 1 6.0844 -4.3657 0.8267 14 6 7.7423 -4.9049 -0.4049 15 7 8.6454 -4.4836 -1.2631 16 14 7.7025 -6.7024 0.1019 17 1 6.3876 -7.2898 -0.2604 18 1 8.7844 -7.4387 -0.6000 19 1 7.9042 -6.8077 1.5693 20 6 5.7470 -0.3170 0.0341 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5140 24 1 1.6538 2.1345 -0.0033 25 1 4.1193 2.1332 0.0043 26 1 1.6483 -2.1291 0.0003 27 1 6.7108 -2.4921 -1.3641 28 1 7.8232 -2.1385 -0.0202 29 1 9.2905 -5.1064 -1.6332 30 1 6.2643 0.2860 0.7804 31 1 6.1916 -0.1800 -0.9516 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = -42.502324 kcal Electronic energy + Delta-G solvation = -14018.627431 eV Core-core repulsion = 11649.887010 eV Total energy + Delta-G solvation = -2368.740421 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.99193 -38.73957 -35.43302 -34.11892 -32.75678 -30.92654 -29.83543 -26.96581 -24.81776 -23.40208 -22.49746 -21.62647 -18.62722 -17.92702 -17.56779 -16.85537 -16.43861 -15.77482 -15.16466 -14.66433 -14.41633 -14.19592 -14.00256 -13.65617 -13.59141 -13.19929 -12.87846 -12.84110 -12.57876 -12.49702 -12.37569 -11.89698 -11.69176 -11.28609 -11.18014 -10.62543 -9.66538 -8.96492 -8.24548 -6.34621 0.35218 0.47416 1.37431 1.40984 1.49075 2.37840 2.46711 2.77563 3.09791 3.58762 3.71880 4.00681 4.09907 4.12203 4.26307 4.46966 4.57294 4.71547 4.74060 4.87149 4.89332 4.92059 5.04136 5.28052 5.30312 5.40759 5.47487 5.58184 5.63928 5.70890 5.88602 6.14221 6.41933 6.76374 7.33247 8.87140 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050401 B = 0.006424 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.414736 B = 4357.371762 C = 4794.150354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.055 4.055 3 C -0.153 4.153 4 C -0.068 4.068 5 C -0.198 4.198 6 C 0.076 3.924 7 C -0.166 4.166 8 O -0.323 6.323 9 C 0.091 3.909 10 H 0.075 0.925 11 C 0.031 3.969 12 C -0.540 4.540 13 H 0.053 0.947 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.099 4.099 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.162 0.838 25 H 0.150 0.850 26 H 0.125 0.875 27 H -0.003 1.003 28 H 0.030 0.970 29 H 0.266 0.734 30 H 0.109 0.891 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.357 11.938 3.438 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.055 4.055 3 C -0.171 4.171 4 C -0.086 4.086 5 C -0.198 4.198 6 C 0.030 3.970 7 C -0.184 4.184 8 O -0.238 6.238 9 C 0.036 3.964 10 H 0.093 0.907 11 C -0.006 4.006 12 C -0.578 4.578 13 H 0.071 0.929 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.789 3.211 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.136 4.136 21 H 0.101 0.899 22 H 0.088 0.912 23 H 0.109 0.891 24 H 0.179 0.821 25 H 0.168 0.832 26 H 0.143 0.857 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.227 11.642 3.280 17.923 hybrid contribution 0.677 -1.232 -0.032 1.406 sum -12.550 10.410 3.248 16.626 Atomic orbital electron populations 1.20850 0.88065 1.04080 1.03486 1.20001 0.97798 0.91362 0.96388 1.21291 0.93236 0.98577 1.03955 1.20650 0.94604 0.96226 0.97103 1.21093 0.95485 0.94470 1.08797 1.20265 0.92587 0.87358 0.96780 1.20389 0.89343 0.99951 1.08754 1.86946 1.21264 1.33690 1.81895 1.23533 0.81563 0.92957 0.98364 0.90717 1.19116 0.92052 0.94824 0.94578 1.21442 1.15065 0.94897 1.26348 0.92905 1.25906 0.94809 1.03849 0.94854 1.70059 1.18818 1.36984 1.31157 0.85499 0.77825 0.78813 0.78916 1.19876 1.20248 1.18895 1.21835 0.93162 0.95149 1.03470 0.89903 0.91163 0.89128 0.82082 0.83219 0.85746 0.98446 0.95237 0.92530 0.87255 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.00 71.24 0.71 -1.02 16 2 C -0.06 -1.36 5.87 -19.92 -0.12 -1.48 16 3 C -0.15 -3.40 9.71 22.31 0.22 -3.18 16 4 C -0.07 -1.77 10.03 22.18 0.22 -1.55 16 5 C -0.20 -6.82 6.27 -19.52 -0.12 -6.94 16 6 C 0.08 2.99 7.03 22.68 0.16 3.15 16 7 C -0.17 -5.39 9.70 22.45 0.22 -5.17 16 8 O -0.32 -15.59 10.64 -95.06 -1.01 -16.60 16 9 C 0.09 4.15 3.56 31.17 0.11 4.26 16 10 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 11 C 0.03 1.71 4.68 29.85 0.14 1.85 16 12 C -0.54 -32.16 8.95 25.60 0.23 -31.93 16 13 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 16 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.10 -3.60 6.65 30.73 0.20 -3.40 16 21 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 23 H 0.09 1.04 8.08 -2.38 -0.02 1.02 16 24 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 25 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 26 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 27 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 28 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.08 3.01 7.92 -2.39 -0.02 2.99 16 Total: -1.00 -69.66 267.72 4.84 -64.83 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.10 Total: 5.67 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 2.44 Total: -44.72 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.01 Total: -16.60 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.66 4.84 -64.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.324 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds