Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 119.82758 * 2 1 4 4 C 1.38348 * 119.76643 * 179.82851 * 3 2 1 5 5 C 1.37741 * 119.98295 * 0.02562 * 4 3 2 6 6 C 1.38884 * 120.78134 * 0.33061 * 5 4 3 7 7 C 1.37934 * 119.82624 * 179.97438 * 2 1 3 8 8 O 1.36143 * 111.22994 * 178.96574 * 6 5 4 9 9 C 1.43875 * 109.24389 * 19.02304 * 8 6 5 10 10 C 1.53003 * 110.76231 * 90.56193 * 9 8 6 11 11 C 1.50704 * 110.77441 * 213.94161 * 9 8 6 12 12 H 1.07994 * 119.99838 * 113.33232 * 11 9 8 13 13 C 1.37876 * 119.99869 * 293.32319 * 11 9 8 14 14 N 1.31511 * 120.00490 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99726 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47434 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47060 * 120.00695 * 15 13 11 18 18 H 1.48500 * 109.46963 * 240.00165 * 15 13 11 19 19 C 1.51638 * 132.17247 * 180.37432 * 5 4 3 20 20 H 1.08999 * 109.47035 * 89.99701 * 1 2 3 21 21 H 1.08997 * 109.47088 * 209.99660 * 1 2 3 22 22 H 1.08997 * 109.46478 * 329.99988 * 1 2 3 23 23 H 1.07998 * 120.11327 * 359.81272 * 3 2 1 24 24 H 1.08000 * 120.00469 * 179.97438 * 4 3 2 25 25 H 1.08002 * 119.88046 * 0.02562 * 7 2 1 26 26 H 1.08996 * 109.46697 * 306.67721 * 10 9 8 27 27 H 1.08998 * 109.47202 * 66.68125 * 10 9 8 28 28 H 1.08999 * 109.46853 * 186.68225 * 10 9 8 29 29 H 0.97002 * 120.00737 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.93994 * 282.73176 * 19 5 4 31 31 H 1.08997 * 110.93769 * 46.38356 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1997 0.0000 4 6 3.5783 1.1983 0.0036 5 6 4.2654 0.0044 0.0066 6 6 3.5858 -1.2068 -0.0008 7 6 2.1930 -1.1966 0.0005 8 8 4.4513 -2.2575 -0.0190 9 6 5.7476 -1.8118 0.4180 10 6 5.8924 -1.9677 1.9331 11 6 6.8405 -2.5573 -0.3038 12 1 7.4888 -2.0335 -0.9905 13 6 7.0127 -3.9080 -0.0873 14 7 6.2230 -4.5460 0.7487 15 14 8.3679 -4.8319 -0.9815 16 1 9.1118 -3.8926 -1.8587 17 1 9.3000 -5.4256 0.0105 18 1 7.7695 -5.9119 -1.8066 19 6 5.7472 -0.3173 0.0181 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6539 2.1345 -0.0031 24 1 4.1194 2.1329 0.0032 25 1 1.6482 -2.1292 0.0005 26 1 5.0597 -1.4706 2.4306 27 1 5.8902 -3.0266 2.1913 28 1 6.8305 -1.5167 2.2567 29 1 6.3439 -5.4964 0.9007 30 1 6.1837 -0.1785 -0.9710 31 1 6.2707 0.2846 0.7608 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -18.233357 kcal Electronic energy + Delta-G solvation = -14566.036745 eV Core-core repulsion = 12198.348706 eV Total energy + Delta-G solvation = -2367.688039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08504 -37.04125 -33.24726 -32.38376 -30.56178 -29.20561 -27.46364 -25.53297 -24.10263 -21.76093 -20.43975 -19.74789 -16.89394 -15.81621 -15.09374 -14.95928 -14.60804 -14.01249 -13.44494 -13.24215 -12.82890 -12.52156 -12.19100 -11.87910 -11.64865 -11.41186 -11.15405 -11.00179 -10.87813 -10.66937 -10.45201 -10.22428 -10.05944 -9.37517 -9.12583 -8.65369 -8.10426 -7.08514 -6.16275 -4.35911 1.92151 2.13221 3.21127 3.29814 3.33561 4.27057 4.30978 4.55345 5.21522 5.27625 5.42529 5.53149 5.66747 5.81528 5.84340 5.99711 6.01953 6.20305 6.29251 6.34037 6.67380 6.71903 6.78009 6.93422 6.97889 7.09742 7.14318 7.27926 7.52802 7.60940 7.96377 8.10145 8.50839 8.81577 9.37182 10.85309 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050583 B = 0.008089 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.414337 B = 3460.584573 C = 3664.912945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.061 4.061 3 C -0.179 4.179 4 C -0.073 4.073 5 C -0.189 4.189 6 C 0.136 3.864 7 C -0.168 4.168 8 O -0.281 6.281 9 C 0.230 3.770 10 C -0.150 4.150 11 C -0.524 4.524 12 H 0.071 0.929 13 C 0.079 3.921 14 N -0.858 5.858 15 Si 0.900 3.100 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.099 4.099 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.017 0.983 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 7.481 -0.075 9.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.091 4.091 5 C -0.190 4.190 6 C 0.087 3.913 7 C -0.187 4.187 8 O -0.194 6.194 9 C 0.195 3.805 10 C -0.207 4.207 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.127 4.127 14 N -0.494 5.494 15 Si 0.727 3.273 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.136 4.136 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.135 0.865 26 H 0.036 0.964 27 H 0.117 0.883 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.843 7.049 -0.040 9.155 hybrid contribution 0.729 -0.372 -0.436 0.927 sum -5.113 6.677 -0.476 8.423 Atomic orbital electron populations 1.20720 0.91638 1.02218 1.01833 1.19425 0.95250 0.92475 0.98963 1.20602 0.93628 0.96812 1.08701 1.20183 0.93638 0.96219 0.99075 1.21125 0.96909 0.93739 1.07267 1.20079 0.91668 0.88668 0.90836 1.20071 0.90865 0.97843 1.09887 1.87391 1.21512 1.31570 1.78920 1.20446 0.79748 0.87585 0.92679 1.22111 0.97845 1.05097 0.95659 1.20998 1.13092 0.94305 1.27637 0.91115 1.25113 0.95708 0.97667 0.94243 1.69922 1.36656 1.09576 1.33256 0.86416 0.81391 0.79820 0.79709 1.19421 1.20626 1.20630 1.21961 0.90813 0.99082 1.01747 0.91585 0.91819 0.91939 0.86809 0.86983 0.86458 0.96434 0.88296 0.93658 0.92516 0.90506 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.00 36.01 0.36 -0.99 16 2 C -0.06 -1.03 5.87 -104.71 -0.61 -1.64 16 3 C -0.18 -2.93 9.71 -39.52 -0.38 -3.31 16 4 C -0.07 -1.31 10.03 -39.72 -0.40 -1.71 16 5 C -0.19 -4.04 6.26 -104.10 -0.65 -4.70 16 6 C 0.14 3.18 6.91 -38.95 -0.27 2.91 16 7 C -0.17 -3.36 9.70 -39.30 -0.38 -3.74 16 8 O -0.28 -7.63 10.36 -20.19 -0.21 -7.84 16 9 C 0.23 5.91 0.75 -90.87 -0.07 5.85 16 10 C -0.15 -3.68 8.65 37.16 0.32 -3.36 16 11 C -0.52 -14.28 8.34 -34.44 -0.29 -14.56 16 12 H 0.07 1.87 7.62 -52.49 -0.40 1.47 16 13 C 0.08 2.15 5.30 -17.82 -0.09 2.06 16 14 N -0.86 -24.15 11.02 55.43 0.61 -23.54 16 15 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.10 -2.19 6.16 -26.52 -0.16 -2.35 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 22 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 23 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 24 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 26 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 27 H 0.10 2.66 5.85 -51.93 -0.30 2.35 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.08 1.67 7.79 -51.93 -0.40 1.27 16 31 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 LS Contribution 262.12 15.07 3.95 3.95 Total: -1.00 -29.26 262.12 -7.33 -36.59 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.03 Total: 0.74 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -2.63 Total: -25.55 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.61 Total: -23.54 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.21 Total: -7.84 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.26 -7.33 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.358 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds