Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 119.82758 * 2 1 4 4 C 1.38348 * 119.76643 * 179.82851 * 3 2 1 5 5 C 1.37741 * 119.98295 * 0.02562 * 4 3 2 6 6 C 1.38884 * 120.78134 * 0.33061 * 5 4 3 7 7 C 1.37934 * 119.82624 * 179.97438 * 2 1 3 8 8 O 1.36143 * 111.22994 * 178.96574 * 6 5 4 9 9 C 1.43875 * 109.24389 * 19.02304 * 8 6 5 10 10 C 1.53003 * 110.76231 * 90.56193 * 9 8 6 11 11 C 1.50704 * 110.77441 * 213.94161 * 9 8 6 12 12 H 1.07994 * 119.99838 * 113.33232 * 11 9 8 13 13 C 1.37876 * 119.99869 * 293.32319 * 11 9 8 14 14 N 1.31511 * 120.00490 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99726 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47434 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47060 * 120.00695 * 15 13 11 18 18 H 1.48500 * 109.46963 * 240.00165 * 15 13 11 19 19 C 1.51638 * 132.17247 * 180.37432 * 5 4 3 20 20 H 1.08999 * 109.47035 * 89.99701 * 1 2 3 21 21 H 1.08997 * 109.47088 * 209.99660 * 1 2 3 22 22 H 1.08997 * 109.46478 * 329.99988 * 1 2 3 23 23 H 1.07998 * 120.11327 * 359.81272 * 3 2 1 24 24 H 1.08000 * 120.00469 * 179.97438 * 4 3 2 25 25 H 1.08002 * 119.88046 * 0.02562 * 7 2 1 26 26 H 1.08996 * 109.46697 * 306.67721 * 10 9 8 27 27 H 1.08998 * 109.47202 * 66.68125 * 10 9 8 28 28 H 1.08999 * 109.46853 * 186.68225 * 10 9 8 29 29 H 0.97002 * 120.00737 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.93994 * 282.73176 * 19 5 4 31 31 H 1.08997 * 110.93769 * 46.38356 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1997 0.0000 4 6 3.5783 1.1983 0.0036 5 6 4.2654 0.0044 0.0066 6 6 3.5858 -1.2068 -0.0008 7 6 2.1930 -1.1966 0.0005 8 8 4.4513 -2.2575 -0.0190 9 6 5.7476 -1.8118 0.4180 10 6 5.8924 -1.9677 1.9331 11 6 6.8405 -2.5573 -0.3038 12 1 7.4888 -2.0335 -0.9905 13 6 7.0127 -3.9080 -0.0873 14 7 6.2230 -4.5460 0.7487 15 14 8.3679 -4.8319 -0.9815 16 1 9.1118 -3.8926 -1.8587 17 1 9.3000 -5.4256 0.0105 18 1 7.7695 -5.9119 -1.8066 19 6 5.7472 -0.3173 0.0181 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6539 2.1345 -0.0031 24 1 4.1194 2.1329 0.0032 25 1 1.6482 -2.1292 0.0005 26 1 5.0597 -1.4706 2.4306 27 1 5.8902 -3.0266 2.1913 28 1 6.8305 -1.5167 2.2567 29 1 6.3439 -5.4964 0.9007 30 1 6.1837 -0.1785 -0.9710 31 1 6.2707 0.2846 0.7608 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -34.670553 kcal Electronic energy + Delta-G solvation = -14566.749516 eV Core-core repulsion = 12198.348706 eV Total energy + Delta-G solvation = -2368.400810 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.75002 -38.58460 -35.21698 -33.91621 -32.29528 -30.73013 -29.00657 -27.54500 -25.62260 -23.29714 -22.08520 -21.46007 -18.81635 -17.43710 -16.76918 -16.67225 -16.33026 -15.68862 -14.98554 -14.58281 -14.34226 -14.23996 -13.61861 -13.52183 -13.17929 -13.01640 -12.83666 -12.73630 -12.50829 -12.40089 -12.22716 -12.03749 -11.60533 -11.22021 -10.95741 -10.68252 -9.55426 -8.71463 -8.19202 -6.47063 0.46700 0.63462 1.39117 1.40983 1.53421 2.35514 2.71065 2.91071 3.33949 3.85975 3.99520 4.18661 4.21926 4.40554 4.55033 4.58134 4.76705 4.77467 4.84734 4.89914 4.94664 5.03092 5.12845 5.26962 5.38900 5.51709 5.54985 5.72037 5.76374 5.95059 6.07906 6.13081 6.55394 6.94125 7.30299 8.82340 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050583 B = 0.008089 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.414337 B = 3460.584573 C = 3664.912945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.164 4.164 4 C -0.071 4.071 5 C -0.207 4.207 6 C 0.087 3.913 7 C -0.183 4.183 8 O -0.325 6.325 9 C 0.214 3.786 10 C -0.139 4.139 11 C -0.547 4.547 12 H 0.069 0.931 13 C 0.030 3.970 14 N -0.891 5.891 15 Si 0.967 3.033 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.282 1.282 19 C -0.091 4.091 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.159 0.841 24 H 0.145 0.855 25 H 0.115 0.885 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.071 0.929 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 9.691 -0.453 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.089 4.089 5 C -0.208 4.208 6 C 0.039 3.961 7 C -0.202 4.202 8 O -0.239 6.239 9 C 0.179 3.821 10 C -0.197 4.197 11 C -0.584 4.584 12 H 0.087 0.913 13 C -0.173 4.173 14 N -0.527 5.527 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.207 1.207 19 C -0.129 4.129 20 H 0.101 0.899 21 H 0.085 0.915 22 H 0.108 0.892 23 H 0.177 0.823 24 H 0.162 0.838 25 H 0.133 0.867 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.944 9.279 -0.416 11.597 hybrid contribution 0.905 -0.948 -0.314 1.348 sum -6.039 8.331 -0.729 10.315 Atomic orbital electron populations 1.20818 0.88173 1.03834 1.03369 1.19964 0.97682 0.91377 0.96572 1.21171 0.93139 0.98334 1.05574 1.20619 0.94668 0.96082 0.97530 1.21198 0.96076 0.94466 1.09013 1.20504 0.92755 0.88617 0.94183 1.20372 0.89873 0.99497 1.10473 1.87253 1.22493 1.33739 1.80448 1.20534 0.79343 0.89577 0.92600 1.21968 0.98530 1.03351 0.95860 1.21350 1.14060 0.95086 1.27910 0.91283 1.25939 0.97948 0.98486 0.94922 1.70065 1.38302 1.09750 1.34594 0.85389 0.78617 0.78304 0.78619 1.18639 1.19606 1.20746 1.21797 0.92172 0.97112 1.01772 0.89903 0.91479 0.89161 0.82322 0.83767 0.86710 0.95993 0.91003 0.92464 0.92503 0.91061 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 10.00 71.24 0.71 -1.49 16 2 C -0.06 -1.71 5.87 -19.92 -0.12 -1.83 16 3 C -0.16 -4.64 9.71 22.31 0.22 -4.42 16 4 C -0.07 -2.33 10.03 22.18 0.22 -2.10 16 5 C -0.21 -8.71 6.26 -19.53 -0.12 -8.84 16 6 C 0.09 4.12 6.91 22.68 0.16 4.28 16 7 C -0.18 -7.32 9.70 22.45 0.22 -7.10 16 8 O -0.32 -18.47 10.36 -95.18 -0.99 -19.45 16 9 C 0.21 11.39 0.75 -10.96 -0.01 11.38 16 10 C -0.14 -7.11 8.65 71.98 0.62 -6.48 16 11 C -0.55 -30.79 8.34 25.60 0.21 -30.57 16 12 H 0.07 3.76 7.62 -2.91 -0.02 3.73 16 13 C 0.03 1.69 5.30 84.65 0.45 2.14 16 14 N -0.89 -52.04 11.02 21.45 0.24 -51.80 16 15 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.09 -4.08 6.16 30.73 0.19 -3.89 16 20 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 22 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 23 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 24 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 25 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 27 H 0.07 4.04 5.85 -2.39 -0.01 4.03 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.64 16 29 H 0.27 14.57 8.31 -92.71 -0.77 13.79 16 30 H 0.07 3.16 7.79 -2.39 -0.02 3.14 16 31 H 0.09 3.43 7.92 -2.39 -0.02 3.41 16 Total: -1.00 -66.08 262.12 5.14 -60.94 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.11 Total: 13.96 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 2.75 Total: -48.94 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.24 Total: -51.80 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.99 Total: -19.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.08 5.14 -60.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.270 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds