Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37978 * 119.88252 * 2 1 4 4 C 1.38242 * 120.34808 * 179.97438 * 3 2 1 5 5 C 1.38392 * 119.76922 * 0.12803 * 4 3 2 6 6 C 1.37691 * 119.97887 * 0.03445 * 5 4 3 7 7 C 1.38924 * 120.78809 * 359.64882 * 6 5 4 8 8 O 1.36132 * 111.23266 * 181.04208 * 7 6 5 9 9 C 1.43772 * 109.23609 * 340.98034 * 8 7 6 10 10 H 1.09004 * 110.75086 * 269.42044 * 9 8 7 11 11 C 1.53001 * 110.74840 * 146.07838 * 9 8 7 12 12 C 1.50703 * 109.47158 * 71.62112 * 11 9 8 13 13 H 1.08002 * 119.99990 * 0.02562 * 12 11 9 14 14 C 1.37881 * 119.99801 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99997 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46948 * 89.99981 * 16 14 12 18 18 H 1.48494 * 109.47195 * 210.00278 * 16 14 12 19 19 H 1.48501 * 109.47504 * 330.00590 * 16 14 12 20 20 C 1.51646 * 132.18055 * 179.61409 * 6 5 4 21 21 H 1.09005 * 109.46968 * 270.02567 * 1 2 3 22 22 H 1.09001 * 109.46885 * 30.02332 * 1 2 3 23 23 H 1.08994 * 109.47273 * 150.02324 * 1 2 3 24 24 H 1.07994 * 119.82418 * 359.97160 * 3 2 1 25 25 H 1.08001 * 120.11316 * 180.17396 * 4 3 2 26 26 H 1.08001 * 120.00662 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47809 * 191.62553 * 11 9 8 28 28 H 1.09002 * 109.46602 * 311.62386 * 11 9 8 29 29 H 0.96996 * 119.99594 * 179.97438 * 15 14 12 30 30 H 1.09002 * 110.93855 * 313.57789 * 20 6 5 31 31 H 1.08994 * 110.94071 * 77.25857 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5768 1.2076 0.0005 5 6 4.2737 0.0119 -0.0016 6 6 3.5897 -1.1831 -0.0050 7 6 2.2007 -1.2074 0.0010 8 8 1.7300 -2.4846 0.0194 9 6 2.7686 -3.3785 -0.4159 10 1 2.7256 -3.5241 -1.4953 11 6 2.6734 -4.7180 0.3173 12 6 1.4738 -5.4805 -0.1833 13 1 0.8427 -5.0527 -0.9482 14 6 1.1820 -6.7243 0.3353 15 7 1.9503 -7.2450 1.2671 16 14 -0.3045 -7.6699 -0.2857 17 1 0.0943 -8.5180 -1.4376 18 1 -0.8339 -8.5302 0.8027 19 1 -1.3554 -6.7130 -0.7160 20 6 4.0591 -2.6250 -0.0155 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6497 2.1288 -0.0005 25 1 4.1110 2.1462 0.0034 26 1 5.3537 0.0162 -0.0008 27 1 3.5767 -5.2990 0.1316 28 1 2.5698 -4.5397 1.3877 29 1 1.7448 -8.1198 1.6321 30 1 4.8433 -2.7740 -0.7577 31 1 4.3981 -2.9316 0.9740 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261099134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -24.454160 kcal Electronic energy + Delta-G solvation = -14183.276472 eV Core-core repulsion = 11815.318678 eV Total energy + Delta-G solvation = -2367.957794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.61725 -37.22492 -33.51486 -32.91958 -30.81137 -30.15356 -26.83650 -26.45429 -23.39839 -21.76735 -20.56083 -20.38665 -16.89362 -16.55650 -15.99342 -15.16267 -14.88197 -14.22052 -13.69826 -13.21951 -13.11123 -12.57777 -12.50800 -12.21827 -11.97851 -11.66780 -11.43753 -11.24557 -11.17326 -10.73615 -10.57366 -10.32650 -10.25077 -9.45848 -9.14678 -8.42615 -8.40966 -7.61147 -6.03766 -4.05502 1.55225 1.69691 3.31997 3.38192 3.43160 3.87152 4.03241 4.44674 4.90759 5.02868 5.13087 5.31318 5.34297 5.49495 5.58708 5.71195 5.77031 5.86503 5.91344 6.07259 6.20691 6.35115 6.52075 6.60436 6.66324 6.67140 6.83569 6.98728 7.45247 7.57831 7.88226 7.93320 8.32685 8.98356 9.58079 11.07754 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.044553 B = 0.007168 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.312037 B = 3905.133666 C = 4402.687145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.079 4.079 6 C -0.175 4.175 7 C 0.119 3.881 8 O -0.283 6.283 9 C 0.090 3.910 10 H 0.075 0.925 11 C 0.025 3.975 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.110 4.110 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 14.111 -2.714 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.119 4.119 3 C -0.110 4.110 4 C -0.180 4.180 5 C -0.097 4.097 6 C -0.176 4.176 7 C 0.072 3.928 8 O -0.196 6.196 9 C 0.035 3.965 10 H 0.093 0.907 11 C -0.012 4.012 12 C -0.555 4.555 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.147 4.147 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.324 13.832 -2.544 14.255 hybrid contribution -0.528 -0.604 -0.264 0.845 sum 1.796 13.228 -2.808 13.641 Atomic orbital electron populations 1.20641 0.90973 1.02505 1.02174 1.19121 0.96232 0.89817 1.06722 1.20659 0.94127 0.96265 0.99940 1.20858 0.94078 0.97364 1.05662 1.20239 0.99348 0.90771 0.99366 1.21011 0.94195 0.95829 1.06582 1.19697 0.91820 0.86852 0.94428 1.87034 1.39853 1.11888 1.80844 1.23828 0.81716 0.91660 0.99311 0.90731 1.19304 0.98315 0.87410 0.96175 1.21140 1.10768 1.01626 1.21936 0.92329 1.24995 0.96810 0.97598 0.94994 1.69950 1.38444 1.17533 1.27680 0.86539 0.83001 0.79795 0.78396 1.20631 1.21184 1.19778 1.21994 0.99614 0.89899 1.03229 0.91587 0.92077 0.91158 0.85878 0.86153 0.86394 0.94234 0.95210 0.92889 0.89918 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.98 36.01 0.36 -1.16 16 2 C -0.12 -1.93 5.90 -104.34 -0.62 -2.54 16 3 C -0.09 -1.25 9.66 -39.68 -0.38 -1.63 16 4 C -0.16 -2.11 10.07 -39.52 -0.40 -2.51 16 5 C -0.08 -1.15 10.03 -39.72 -0.40 -1.55 16 6 C -0.18 -3.07 6.27 -104.10 -0.65 -3.72 16 7 C 0.12 2.29 6.73 -38.95 -0.26 2.03 16 8 O -0.28 -6.38 10.62 -20.16 -0.21 -6.59 16 9 C 0.09 1.95 3.51 -25.83 -0.09 1.86 16 10 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 11 C 0.02 0.64 4.66 -27.88 -0.13 0.51 16 12 C -0.52 -14.71 9.05 -34.44 -0.31 -15.02 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.11 -1.97 6.65 -26.52 -0.18 -2.15 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 24 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.59 7.92 -51.93 -0.41 1.18 16 LS Contribution 267.68 15.07 4.03 4.03 Total: -1.00 -30.77 267.68 -7.79 -38.56 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.17 Total: -2.41 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.16 Total: -24.35 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.21 Total: -6.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.77 -7.79 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261099134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.106 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds