Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37978 * 119.88252 * 2 1 4 4 C 1.38242 * 120.34808 * 179.97438 * 3 2 1 5 5 C 1.38392 * 119.76922 * 0.12803 * 4 3 2 6 6 C 1.37691 * 119.97887 * 0.03445 * 5 4 3 7 7 C 1.38924 * 120.78809 * 359.64882 * 6 5 4 8 8 O 1.36132 * 111.23266 * 181.04208 * 7 6 5 9 9 C 1.43772 * 109.23609 * 340.98034 * 8 7 6 10 10 H 1.09004 * 110.75086 * 269.42044 * 9 8 7 11 11 C 1.53001 * 110.74840 * 146.07838 * 9 8 7 12 12 C 1.50703 * 109.47158 * 71.62112 * 11 9 8 13 13 H 1.08002 * 119.99990 * 0.02562 * 12 11 9 14 14 C 1.37881 * 119.99801 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99997 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46948 * 89.99981 * 16 14 12 18 18 H 1.48494 * 109.47195 * 210.00278 * 16 14 12 19 19 H 1.48501 * 109.47504 * 330.00590 * 16 14 12 20 20 C 1.51646 * 132.18055 * 179.61409 * 6 5 4 21 21 H 1.09005 * 109.46968 * 270.02567 * 1 2 3 22 22 H 1.09001 * 109.46885 * 30.02332 * 1 2 3 23 23 H 1.08994 * 109.47273 * 150.02324 * 1 2 3 24 24 H 1.07994 * 119.82418 * 359.97160 * 3 2 1 25 25 H 1.08001 * 120.11316 * 180.17396 * 4 3 2 26 26 H 1.08001 * 120.00662 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47809 * 191.62553 * 11 9 8 28 28 H 1.09002 * 109.46602 * 311.62386 * 11 9 8 29 29 H 0.96996 * 119.99594 * 179.97438 * 15 14 12 30 30 H 1.09002 * 110.93855 * 313.57789 * 20 6 5 31 31 H 1.08994 * 110.94071 * 77.25857 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5768 1.2076 0.0005 5 6 4.2737 0.0119 -0.0016 6 6 3.5897 -1.1831 -0.0050 7 6 2.2007 -1.2074 0.0010 8 8 1.7300 -2.4846 0.0194 9 6 2.7686 -3.3785 -0.4159 10 1 2.7256 -3.5241 -1.4953 11 6 2.6734 -4.7180 0.3173 12 6 1.4738 -5.4805 -0.1833 13 1 0.8427 -5.0527 -0.9482 14 6 1.1820 -6.7243 0.3353 15 7 1.9503 -7.2450 1.2671 16 14 -0.3045 -7.6699 -0.2857 17 1 0.0943 -8.5180 -1.4376 18 1 -0.8339 -8.5302 0.8027 19 1 -1.3554 -6.7130 -0.7160 20 6 4.0591 -2.6250 -0.0155 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6497 2.1288 -0.0005 25 1 4.1110 2.1462 0.0034 26 1 5.3537 0.0162 -0.0008 27 1 3.5767 -5.2990 0.1316 28 1 2.5698 -4.5397 1.3877 29 1 1.7448 -8.1198 1.6321 30 1 4.8433 -2.7740 -0.7577 31 1 4.3981 -2.9316 0.9740 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261099134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -42.223257 kcal Electronic energy + Delta-G solvation = -14184.046998 eV Core-core repulsion = 11815.318678 eV Total energy + Delta-G solvation = -2368.728319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01013 -38.53520 -35.44328 -34.41461 -32.42936 -31.62021 -28.54293 -27.63542 -25.31890 -23.02380 -22.26424 -21.66667 -18.66928 -18.25437 -17.45503 -16.82021 -16.30161 -15.84783 -15.05022 -14.52015 -14.48673 -14.13747 -13.95208 -13.77888 -13.60665 -13.18617 -13.08212 -12.82694 -12.60621 -12.39547 -12.29704 -11.97536 -11.66137 -11.36164 -11.18121 -10.63133 -9.58117 -8.94422 -8.25100 -6.35281 0.38693 0.48595 1.37210 1.39114 1.50635 2.37875 2.49474 2.80066 3.09411 3.58662 3.70695 3.97769 4.12129 4.13681 4.38587 4.45326 4.57735 4.66468 4.76207 4.78484 4.86302 4.89164 5.02253 5.26198 5.31810 5.47280 5.52990 5.55326 5.64124 5.70622 5.89980 6.13913 6.43442 6.75979 7.32749 8.86875 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.044553 B = 0.007168 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.312037 B = 3905.133666 C = 4402.687145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.130 4.130 3 C -0.087 4.087 4 C -0.145 4.145 5 C -0.081 4.081 6 C -0.189 4.189 7 C 0.068 3.932 8 O -0.320 6.320 9 C 0.092 3.908 10 H 0.073 0.927 11 C 0.032 3.968 12 C -0.539 4.539 13 H 0.053 0.947 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.270 1.270 20 C -0.101 4.101 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.044 0.956 24 H 0.162 0.838 25 H 0.163 0.837 26 H 0.147 0.853 27 H 0.029 0.971 28 H -0.003 1.003 29 H 0.266 0.734 30 H 0.108 0.892 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 16.528 -3.446 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.163 4.163 5 C -0.099 4.099 6 C -0.190 4.190 7 C 0.023 3.977 8 O -0.235 6.235 9 C 0.036 3.964 10 H 0.091 0.909 11 C -0.005 4.005 12 C -0.577 4.577 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.138 4.138 21 H 0.087 0.913 22 H 0.113 0.887 23 H 0.063 0.937 24 H 0.179 0.821 25 H 0.181 0.819 26 H 0.165 0.835 27 H 0.047 0.953 28 H 0.015 0.985 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.505 16.268 -3.281 16.784 hybrid contribution -0.551 -1.209 -0.013 1.329 sum 1.954 15.059 -3.294 15.539 Atomic orbital electron populations 1.20665 0.90192 1.02874 1.02452 1.19564 0.97275 0.89824 1.06424 1.21142 0.94815 0.96437 0.98113 1.21411 0.94046 0.98406 1.02451 1.20651 1.00953 0.90021 0.98277 1.21108 0.93672 0.96309 1.07917 1.20151 0.93291 0.86274 0.98031 1.86932 1.40564 1.13879 1.82093 1.23519 0.84089 0.90385 0.98384 0.90907 1.19099 0.97037 0.89794 0.94557 1.21492 1.11698 1.02394 1.22111 0.92849 1.25917 0.99936 0.98568 0.95053 1.70066 1.40205 1.18079 1.28724 0.85439 0.79017 0.78314 0.78260 1.19163 1.20406 1.19438 1.21851 0.98197 0.90302 1.03438 0.91345 0.88702 0.93729 0.82073 0.81933 0.83533 0.95336 0.98465 0.92531 0.87417 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.92 9.98 71.24 0.71 -2.21 16 2 C -0.13 -4.09 5.90 -19.68 -0.12 -4.20 16 3 C -0.09 -2.04 9.66 22.21 0.21 -1.82 16 4 C -0.15 -3.11 10.07 22.31 0.22 -2.89 16 5 C -0.08 -2.10 10.03 22.18 0.22 -1.88 16 6 C -0.19 -6.50 6.27 -19.53 -0.12 -6.62 16 7 C 0.07 2.65 6.73 22.68 0.15 2.80 16 8 O -0.32 -15.23 10.62 -95.05 -1.01 -16.24 16 9 C 0.09 4.17 3.51 31.18 0.11 4.28 16 10 H 0.07 3.23 8.14 -2.38 -0.02 3.22 16 11 C 0.03 1.75 4.66 29.85 0.14 1.89 16 12 C -0.54 -32.01 9.05 25.60 0.23 -31.77 16 13 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.00 0.19 5.46 84.66 0.46 0.66 16 15 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 16 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 C -0.10 -3.68 6.65 30.73 0.20 -3.47 16 21 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 23 H 0.04 1.44 8.01 -2.39 -0.02 1.42 16 24 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 25 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 26 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.08 3.03 7.92 -2.39 -0.02 3.01 16 Total: -1.00 -69.61 267.68 4.84 -64.77 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.10 Total: 6.05 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 2.43 Total: -45.24 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.01 Total: -16.24 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -69.61 4.84 -64.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261099134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.548 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds