Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48502 * 109.47354 * 269.66738 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.66775 * 3 2 1 6 6 H 1.48497 * 109.47308 * 149.66814 * 3 2 1 7 7 C 1.37882 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99941 * 11.03751 * 7 2 1 9 9 C 1.50698 * 119.99958 * 191.03541 * 7 2 1 10 10 C 1.50705 * 110.56608 * 297.37970 * 9 7 2 11 11 C 1.38236 * 119.99936 * 350.73378 * 10 9 7 12 12 C 1.38240 * 120.00135 * 179.74569 * 11 10 9 13 13 C 1.38235 * 119.99373 * 0.54356 * 12 11 10 14 14 C 1.38230 * 120.00390 * 359.70589 * 13 12 11 15 15 C 1.38233 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.54798 * 110.55435 * 60.20086 * 9 7 2 17 17 C 1.54484 * 104.08800 * 118.57154 * 16 9 7 18 18 O 1.44424 * 104.80312 * 336.03532 * 17 16 9 19 19 C 1.44427 * 105.27438 * 40.51068 * 18 17 16 20 20 H 0.97001 * 120.00500 * 359.97438 * 1 2 3 21 21 H 1.08008 * 120.00028 * 359.97438 * 11 10 9 22 22 H 1.07995 * 119.99913 * 180.26970 * 12 11 10 23 23 H 1.08004 * 119.99996 * 179.72776 * 13 12 11 24 24 H 1.08005 * 120.00299 * 180.02562 * 14 13 12 25 25 H 1.08003 * 120.00552 * 179.97438 * 15 14 13 26 26 H 1.09004 * 110.48872 * 359.92752 * 16 9 7 27 27 H 1.08994 * 110.62596 * 237.29035 * 16 9 7 28 28 H 1.09001 * 110.37379 * 217.20130 * 17 16 9 29 29 H 1.08999 * 110.37249 * 94.86140 * 17 16 9 30 30 H 1.08998 * 110.37524 * 78.32511 * 19 18 17 31 31 H 1.09010 * 110.36935 * 200.54904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.5036 2.0424 -1.4000 5 1 1.4429 2.6547 0.6930 6 1 3.5430 1.4423 0.7070 7 6 2.0045 -1.1941 0.0005 8 1 1.4796 -2.1208 -0.1781 9 6 3.4906 -1.2059 0.2504 10 6 4.2152 -0.4448 -0.8299 11 6 3.5322 -0.0238 -1.9556 12 6 4.1955 0.6789 -2.9441 13 6 5.5444 0.9509 -2.8120 14 6 6.2285 0.5255 -1.6887 15 6 5.5640 -0.1724 -0.6977 16 6 3.8123 -0.6130 1.6436 17 6 4.4901 -1.7769 2.4002 18 8 4.0130 -2.9715 1.7435 19 6 4.0139 -2.6569 0.3339 20 1 -0.4851 0.8400 0.0004 21 1 2.4794 -0.2408 -2.0612 22 1 3.6609 1.0116 -3.8215 23 1 6.0637 1.4961 -3.5862 24 1 7.2823 0.7383 -1.5853 25 1 6.0985 -0.5052 0.1798 26 1 2.8958 -0.3105 2.1504 27 1 4.4943 0.2323 1.5531 28 1 4.1899 -1.7743 3.4481 29 1 5.5743 -1.7045 2.3150 30 1 5.0251 -2.7195 -0.0682 31 1 3.3493 -3.3316 -0.2058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -8.860727 kcal Electronic energy + Delta-G solvation = -15183.298453 eV Core-core repulsion = 12816.016841 eV Total energy + Delta-G solvation = -2367.281612 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62171 -37.65341 -33.78104 -31.69926 -30.32815 -29.27742 -27.96295 -25.04608 -22.25226 -21.86088 -21.37795 -19.20243 -17.23376 -16.11167 -15.23131 -14.93446 -14.65065 -14.30622 -13.94500 -13.59962 -12.98963 -12.77196 -12.44872 -12.24223 -11.84196 -11.27323 -11.09966 -10.69584 -10.57787 -10.33833 -10.05659 -9.94568 -9.52601 -9.09262 -8.91304 -8.63834 -8.14316 -7.82293 -6.17803 -4.17239 1.96817 2.04250 3.29325 3.40287 3.45034 4.37546 4.41741 4.76706 5.08713 5.43489 5.51223 5.60162 5.69296 5.77256 5.83650 5.90482 6.06524 6.13961 6.25311 6.37331 6.48790 6.53770 6.69133 6.74280 6.79921 7.03949 7.06982 7.21259 7.33169 7.58958 7.74385 7.77094 8.41648 8.86723 9.43976 10.92637 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.018827 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.641844 B = 1486.883754 C = 2235.173230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.081 3.919 3 Si 0.847 3.153 4 H -0.265 1.265 5 H -0.301 1.301 6 H -0.242 1.242 7 C -0.507 4.507 8 H 0.079 0.921 9 C 0.049 3.951 10 C -0.054 4.054 11 C -0.101 4.101 12 C -0.129 4.129 13 C -0.141 4.141 14 C -0.134 4.134 15 C -0.130 4.130 16 C -0.149 4.149 17 C 0.047 3.953 18 O -0.378 6.378 19 C 0.070 3.930 20 H 0.265 0.735 21 H 0.146 0.854 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.386 1.345 -1.607 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.122 4.122 3 Si 0.675 3.325 4 H -0.190 1.190 5 H -0.229 1.229 6 H -0.166 1.166 7 C -0.544 4.544 8 H 0.097 0.903 9 C 0.048 3.952 10 C -0.054 4.054 11 C -0.118 4.118 12 C -0.147 4.147 13 C -0.159 4.159 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.187 4.187 17 C -0.030 4.030 18 O -0.297 6.297 19 C -0.006 4.006 20 H 0.075 0.925 21 H 0.164 0.836 22 H 0.130 0.870 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.144 1.244 -1.508 10.330 hybrid contribution 0.405 1.350 -0.146 1.417 sum 10.548 2.594 -1.653 10.988 Atomic orbital electron populations 1.69935 1.06374 1.27189 1.48967 1.24998 0.94483 0.98852 0.93869 0.87654 0.81453 0.83917 0.79521 1.19025 1.22853 1.16635 1.20732 0.88635 0.95108 1.49927 0.90266 1.18936 0.96405 0.90728 0.89119 1.20461 0.92630 0.96212 0.96141 1.21573 1.01921 0.95652 0.92696 1.21179 0.94531 0.99741 0.99282 1.20957 0.94834 1.01986 0.98148 1.20953 0.99084 1.00235 0.94902 1.21051 0.94813 1.00143 0.98788 1.23654 1.00611 0.96975 0.97420 1.23342 0.96591 0.85763 0.97279 1.89023 1.87034 1.34610 1.18998 1.23423 0.98360 0.96789 0.82069 0.92499 0.83630 0.86978 0.87214 0.87147 0.86987 0.90401 0.91913 0.90312 0.93870 0.94210 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 2 C 0.08 2.22 4.41 -17.82 -0.08 2.15 16 3 Si 0.85 20.65 22.55 -169.99 -3.83 16.82 16 4 H -0.26 -6.33 5.96 56.52 0.34 -5.99 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.24 -5.60 4.20 56.52 0.24 -5.36 16 7 C -0.51 -13.50 7.32 -34.44 -0.25 -13.75 16 8 H 0.08 2.32 7.79 -52.49 -0.41 1.91 16 9 C 0.05 1.10 0.55 -155.09 -0.08 1.02 16 10 C -0.05 -1.14 2.78 -104.62 -0.29 -1.43 16 11 C -0.10 -2.17 5.66 -39.58 -0.22 -2.39 16 12 C -0.13 -2.41 9.63 -39.58 -0.38 -2.79 16 13 C -0.14 -2.35 10.05 -39.59 -0.40 -2.75 16 14 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 15 C -0.13 -2.39 8.15 -39.58 -0.32 -2.72 16 16 C -0.15 -3.13 4.04 -25.01 -0.10 -3.23 16 17 C 0.05 0.87 7.63 37.94 0.29 1.16 16 18 O -0.38 -8.00 11.65 -35.23 -0.41 -8.41 16 19 C 0.07 1.45 6.65 37.93 0.25 1.70 16 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.15 3.45 5.60 -52.48 -0.29 3.15 16 22 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 23 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 24 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 25 H 0.11 1.88 7.61 -52.48 -0.40 1.48 16 26 H 0.08 1.79 6.90 -51.93 -0.36 1.43 16 27 H 0.06 1.26 5.49 -51.93 -0.28 0.97 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.74 7.43 -51.93 -0.39 0.36 16 31 H 0.09 1.84 7.69 -51.92 -0.40 1.44 16 LS Contribution 239.61 15.07 3.61 3.61 Total: -1.00 -29.21 239.61 -5.86 -35.07 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.01 Total: 3.98 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -1.99 Total: -25.63 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.77 Total: -25.43 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.41 Total: -8.41 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.83 Total: 16.82 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.21 -5.86 -35.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.206 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds