Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48502 * 109.47354 * 269.66738 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.66775 * 3 2 1 6 6 H 1.48497 * 109.47308 * 149.66814 * 3 2 1 7 7 C 1.37882 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99941 * 11.03751 * 7 2 1 9 9 C 1.50698 * 119.99958 * 191.03541 * 7 2 1 10 10 C 1.50705 * 110.56608 * 297.37970 * 9 7 2 11 11 C 1.38236 * 119.99936 * 350.73378 * 10 9 7 12 12 C 1.38240 * 120.00135 * 179.74569 * 11 10 9 13 13 C 1.38235 * 119.99373 * 0.54356 * 12 11 10 14 14 C 1.38230 * 120.00390 * 359.70589 * 13 12 11 15 15 C 1.38233 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.54798 * 110.55435 * 60.20086 * 9 7 2 17 17 C 1.54484 * 104.08800 * 118.57154 * 16 9 7 18 18 O 1.44424 * 104.80312 * 336.03532 * 17 16 9 19 19 C 1.44427 * 105.27438 * 40.51068 * 18 17 16 20 20 H 0.97001 * 120.00500 * 359.97438 * 1 2 3 21 21 H 1.08008 * 120.00028 * 359.97438 * 11 10 9 22 22 H 1.07995 * 119.99913 * 180.26970 * 12 11 10 23 23 H 1.08004 * 119.99996 * 179.72776 * 13 12 11 24 24 H 1.08005 * 120.00299 * 180.02562 * 14 13 12 25 25 H 1.08003 * 120.00552 * 179.97438 * 15 14 13 26 26 H 1.09004 * 110.48872 * 359.92752 * 16 9 7 27 27 H 1.08994 * 110.62596 * 237.29035 * 16 9 7 28 28 H 1.09001 * 110.37379 * 217.20130 * 17 16 9 29 29 H 1.08999 * 110.37249 * 94.86140 * 17 16 9 30 30 H 1.08998 * 110.37524 * 78.32511 * 19 18 17 31 31 H 1.09010 * 110.36935 * 200.54904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.5036 2.0424 -1.4000 5 1 1.4429 2.6547 0.6930 6 1 3.5430 1.4423 0.7070 7 6 2.0045 -1.1941 0.0005 8 1 1.4796 -2.1208 -0.1781 9 6 3.4906 -1.2059 0.2504 10 6 4.2152 -0.4448 -0.8299 11 6 3.5322 -0.0238 -1.9556 12 6 4.1955 0.6789 -2.9441 13 6 5.5444 0.9509 -2.8120 14 6 6.2285 0.5255 -1.6887 15 6 5.5640 -0.1724 -0.6977 16 6 3.8123 -0.6130 1.6436 17 6 4.4901 -1.7769 2.4002 18 8 4.0130 -2.9715 1.7435 19 6 4.0139 -2.6569 0.3339 20 1 -0.4851 0.8400 0.0004 21 1 2.4794 -0.2408 -2.0612 22 1 3.6609 1.0116 -3.8215 23 1 6.0637 1.4961 -3.5862 24 1 7.2823 0.7383 -1.5853 25 1 6.0985 -0.5052 0.1798 26 1 2.8958 -0.3105 2.1504 27 1 4.4943 0.2323 1.5531 28 1 4.1899 -1.7743 3.4481 29 1 5.5743 -1.7045 2.3150 30 1 5.0251 -2.7195 -0.0682 31 1 3.3493 -3.3316 -0.2058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -28.564826 kcal Electronic energy + Delta-G solvation = -15184.152886 eV Core-core repulsion = 12816.016841 eV Total energy + Delta-G solvation = -2368.136045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19213 -39.14208 -35.57904 -33.59541 -31.77603 -30.80171 -29.55257 -26.98284 -23.80186 -23.34415 -22.87701 -20.92229 -19.02529 -17.71488 -16.91789 -16.46670 -16.39097 -15.85645 -15.46274 -15.15447 -14.88583 -14.23745 -14.04122 -13.86237 -13.52302 -12.95066 -12.77193 -12.35743 -12.26481 -11.95346 -11.66706 -11.62695 -11.29184 -10.96341 -10.72637 -10.50052 -9.58509 -9.31955 -8.32810 -6.34615 0.55017 0.62198 1.35064 1.41254 1.46935 2.34465 2.98276 2.99798 3.24876 4.03542 4.14584 4.18327 4.28251 4.28506 4.36169 4.41657 4.52216 4.70921 4.78123 4.86328 4.94151 5.01351 5.09390 5.27083 5.31331 5.37377 5.57596 5.68204 5.75579 5.98486 6.09192 6.28328 6.29694 6.71111 7.30006 8.81852 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.018827 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.641844 B = 1486.883754 C = 2235.173230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.034 3.966 3 Si 0.907 3.093 4 H -0.258 1.258 5 H -0.317 1.317 6 H -0.215 1.215 7 C -0.503 4.503 8 H 0.030 0.970 9 C 0.043 3.957 10 C -0.074 4.074 11 C -0.132 4.132 12 C -0.138 4.138 13 C -0.132 4.132 14 C -0.121 4.121 15 C -0.132 4.132 16 C -0.149 4.149 17 C 0.048 3.952 18 O -0.399 6.399 19 C 0.073 3.927 20 H 0.264 0.736 21 H 0.105 0.895 22 H 0.125 0.875 23 H 0.149 0.851 24 H 0.154 0.846 25 H 0.135 0.865 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 2.716 -1.696 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.164 4.164 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.246 1.246 6 H -0.137 1.137 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.042 3.958 10 C -0.074 4.074 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.150 4.150 14 C -0.139 4.139 15 C -0.150 4.150 16 C -0.187 4.187 17 C -0.028 4.028 18 O -0.318 6.318 19 C -0.003 4.003 20 H 0.072 0.928 21 H 0.123 0.877 22 H 0.143 0.857 23 H 0.167 0.833 24 H 0.172 0.828 25 H 0.153 0.847 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.558 2.594 -1.598 14.873 hybrid contribution -0.947 0.823 -0.186 1.268 sum 13.611 3.416 -1.784 14.146 Atomic orbital electron populations 1.70082 1.08387 1.27852 1.51965 1.25683 0.94881 1.02245 0.93576 0.86685 0.81018 0.79144 0.79782 1.18335 1.24614 1.13745 1.20926 0.91502 0.93081 1.48504 0.95149 1.18884 0.93465 0.92594 0.90851 1.20240 0.94141 0.97511 0.95523 1.21350 1.00522 0.98444 0.94725 1.21401 0.95982 0.99288 0.98944 1.21412 0.93683 1.00809 0.99090 1.21447 1.01000 0.97931 0.93523 1.21279 0.93314 1.00085 1.00305 1.23550 1.00066 0.98704 0.96355 1.23546 0.98496 0.83275 0.97476 1.89000 1.87642 1.36012 1.19171 1.23373 0.99423 0.95340 0.82164 0.92753 0.87660 0.85724 0.83338 0.82834 0.84710 0.93311 0.90039 0.88617 0.89961 0.91170 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 2 C 0.03 1.96 4.41 84.66 0.37 2.33 16 3 Si 0.91 43.76 22.55 68.60 1.55 45.30 16 4 H -0.26 -12.03 5.96 99.48 0.59 -11.44 16 5 H -0.32 -15.91 7.11 99.48 0.71 -15.20 16 6 H -0.21 -9.26 4.20 99.48 0.42 -8.84 16 7 C -0.50 -28.25 7.32 25.60 0.19 -28.06 16 8 H 0.03 1.93 7.79 -2.91 -0.02 1.91 16 9 C 0.04 1.92 0.55 -52.56 -0.03 1.89 16 10 C -0.07 -2.96 2.78 -19.86 -0.06 -3.02 16 11 C -0.13 -5.62 5.66 22.27 0.13 -5.49 16 12 C -0.14 -4.80 9.63 22.27 0.21 -4.58 16 13 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 14 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 15 C -0.13 -4.21 8.15 22.27 0.18 -4.03 16 16 C -0.15 -5.97 4.04 31.71 0.13 -5.85 16 17 C 0.05 1.63 7.63 72.49 0.55 2.18 16 18 O -0.40 -16.37 11.65 -148.98 -1.74 -18.11 16 19 C 0.07 3.00 6.65 72.48 0.48 3.48 16 20 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 21 H 0.11 5.25 5.60 -2.91 -0.02 5.23 16 22 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 23 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 24 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 25 H 0.14 3.66 7.61 -2.91 -0.02 3.64 16 26 H 0.05 2.21 6.90 -2.38 -0.02 2.20 16 27 H 0.08 2.94 5.49 -2.39 -0.01 2.92 16 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.43 7.43 -2.39 -0.02 2.42 16 31 H 0.07 2.97 7.69 -2.38 -0.02 2.95 16 Total: -1.00 -67.35 239.61 3.43 -63.91 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.71 Total: 15.39 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 2.61 Total: -47.61 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.74 Total: -18.11 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.55 Total: 45.30 kcal Total: -67.35 3.43 -63.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.349 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds