Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47464 * 2 1 4 4 C 1.50704 * 109.47581 * 239.99691 * 2 1 3 5 5 H 1.07993 * 120.00045 * 275.01644 * 4 2 1 6 6 C 1.37877 * 119.99572 * 95.00911 * 4 2 1 7 7 N 1.31520 * 119.99678 * 184.92361 * 6 4 2 8 8 Si 1.86796 * 120.00325 * 4.92147 * 6 4 2 9 9 H 1.48496 * 109.47094 * 84.82897 * 8 6 4 10 10 H 1.48497 * 109.47175 * 204.83251 * 8 6 4 11 11 H 1.48508 * 109.47187 * 324.82808 * 8 6 4 12 12 C 1.50709 * 109.47024 * 119.99932 * 2 1 3 13 13 C 1.35339 * 125.69108 * 34.98604 * 12 2 1 14 14 N 1.36117 * 107.09564 * 179.78396 * 13 12 2 15 15 C 1.36521 * 133.69883 * 179.53595 * 14 13 12 16 16 C 1.35627 * 118.55979 * 180.44383 * 15 14 13 17 17 N 1.33370 * 120.17530 * 0.23278 * 16 15 14 18 18 N 1.28620 * 121.79752 * 0.02562 * 17 16 15 19 19 C 1.34070 * 121.07161 * 0.02562 * 18 17 16 20 20 N 1.32319 * 132.83707 * 179.97438 * 19 18 17 21 21 H 1.09003 * 109.47329 * 174.95764 * 1 2 3 22 22 H 1.08997 * 109.47302 * 294.95796 * 1 2 3 23 23 H 1.08996 * 109.47309 * 54.95975 * 1 2 3 24 24 H 0.97000 * 120.00058 * 180.02562 * 7 6 4 25 25 H 1.08005 * 126.44790 * 0.05391 * 13 12 2 26 26 H 1.08004 * 120.72422 * 0.72608 * 15 14 13 27 27 H 1.07994 * 119.91897 * 180.25295 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1353 -1.7855 -1.2290 6 6 2.3605 0.0121 -2.3579 7 7 2.7061 -0.6132 -3.4621 8 14 2.3140 1.8790 -2.3172 9 1 3.5996 2.3946 -1.7818 10 1 2.1065 2.3991 -3.6926 11 1 1.1990 2.3276 -1.4449 12 6 2.0322 -0.7104 1.2306 13 6 1.4464 -1.7785 1.8201 14 7 2.2143 -2.1149 2.8924 15 6 2.1239 -3.0830 3.8508 16 6 3.0809 -3.1370 4.8102 17 7 4.0813 -2.2550 4.8096 18 7 4.1738 -1.3358 3.9147 19 6 3.2611 -1.2257 2.9389 20 7 3.1278 -0.3899 1.9218 21 1 -0.3634 -1.0237 -0.0903 22 1 -0.3634 0.4336 0.9317 23 1 -0.3634 0.5900 -0.8414 24 1 2.9373 -0.1049 -4.2553 25 1 0.5423 -2.2737 1.4976 26 1 1.3103 -3.7934 3.8425 27 1 3.0332 -3.8965 5.5765 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261204700.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 132.160331 kcal Electronic energy + Delta-G solvation = -14023.404626 eV Core-core repulsion = 11590.990554 eV Total energy + Delta-G solvation = -2432.414072 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.04617 -39.11782 -35.13790 -34.14271 -31.88375 -30.83198 -29.16649 -25.42215 -25.19376 -23.79266 -22.39943 -19.78437 -18.69889 -17.82815 -16.93415 -16.32635 -15.74054 -15.07723 -14.41565 -14.06414 -13.40627 -13.22383 -12.60806 -12.32673 -11.96011 -11.71124 -11.25602 -11.05140 -10.75822 -10.48353 -10.12073 -9.93459 -9.66913 -9.41767 -8.76823 -8.60264 -8.00811 -6.17752 -4.19494 0.12242 1.07627 2.30343 3.02793 3.29607 3.36319 3.39524 3.56386 3.68642 4.10148 4.26236 4.36270 4.82225 5.06805 5.14088 5.39978 5.54693 5.72317 6.01190 6.21257 6.35033 6.46867 6.72602 6.85911 6.97036 7.20128 7.55603 7.98713 8.35469 8.55659 8.83294 9.42273 10.94477 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.049526 B = 0.007912 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.225738 B = 3538.270149 C = 3660.973448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.509 4.509 5 H 0.075 0.925 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.876 3.124 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.262 1.262 12 C 0.159 3.841 13 C -0.089 4.089 14 N -0.370 5.370 15 C 0.070 3.930 16 C -0.043 4.043 17 N -0.195 5.195 18 N -0.151 5.151 19 C 0.295 3.705 20 N -0.446 5.446 21 H 0.050 0.950 22 H 0.027 0.973 23 H 0.056 0.944 24 H 0.267 0.733 25 H 0.194 0.806 26 H 0.182 0.818 27 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -4.633 12.864 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.053 3.947 3 H 0.075 0.925 4 C -0.547 4.547 5 H 0.093 0.907 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.703 3.297 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.187 1.187 12 C 0.021 3.979 13 C -0.225 4.225 14 N -0.050 5.050 15 C -0.070 4.070 16 C -0.191 4.191 17 N -0.062 5.062 18 N -0.017 5.017 19 C -0.053 4.053 20 N -0.171 5.171 21 H 0.069 0.931 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.211 0.789 26 H 0.199 0.801 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.656 -3.465 13.116 14.050 hybrid contribution -1.710 -0.523 -0.530 1.865 sum -5.366 -3.988 12.585 14.251 Atomic orbital electron populations 1.22016 0.97065 1.01026 0.99312 1.17945 0.92609 0.96224 0.87931 0.92473 1.20695 1.45044 0.95263 0.93660 0.90709 1.25001 0.93782 0.98633 0.95091 1.69877 1.45083 1.36181 1.01748 0.86861 0.79713 0.85900 0.77230 1.19567 1.21370 1.18679 1.22193 0.88414 0.92701 0.94556 1.22719 1.02656 1.05036 0.92062 1.43922 1.20794 1.21297 1.18977 1.22882 1.02050 0.93027 0.89034 1.23458 0.92952 1.02158 1.00510 1.73578 1.18652 0.99433 1.14516 1.73999 1.17187 1.13303 0.97258 1.23945 0.89614 0.91982 0.99745 1.70628 1.19234 1.23821 1.03438 0.93053 0.95353 0.92543 0.92298 0.78920 0.80070 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.64 37.15 0.32 -2.26 15 2 C 0.07 1.67 2.41 -92.92 -0.22 1.45 15 3 H 0.06 1.37 5.29 -51.93 -0.27 1.09 15 4 C -0.51 -13.75 8.84 -34.44 -0.30 -14.06 15 5 H 0.07 2.20 8.06 -52.49 -0.42 1.77 15 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 7 N -0.89 -26.54 13.96 55.43 0.77 -25.77 15 8 Si 0.88 21.11 26.99 -169.99 -4.59 16.52 15 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.26 -5.90 6.82 56.52 0.39 -5.51 15 12 C 0.16 3.43 5.98 -82.92 -0.50 2.94 15 13 C -0.09 -1.55 10.95 -16.68 -0.18 -1.73 15 14 N -0.37 -6.14 2.95 -64.44 -0.19 -6.33 15 15 C 0.07 0.80 11.13 -16.40 -0.18 0.62 15 16 C -0.04 -0.48 11.21 -17.82 -0.20 -0.68 15 17 N -0.19 -3.05 11.60 30.21 0.35 -2.69 15 18 N -0.15 -2.90 11.67 29.81 0.35 -2.56 15 19 C 0.30 6.00 9.02 -322.38 -2.91 3.09 15 20 N -0.45 -10.30 11.30 -10.60 -0.12 -10.42 15 21 H 0.05 0.89 7.52 -51.93 -0.39 0.50 15 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 25 H 0.19 2.66 7.50 -52.48 -0.39 2.26 15 26 H 0.18 1.13 8.06 -52.48 -0.42 0.71 15 27 H 0.19 1.15 8.06 -52.49 -0.42 0.72 15 LS Contribution 242.23 15.07 3.65 3.65 Total: -1.00 -33.05 242.23 -6.37 -39.42 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -2.32 Total: -3.29 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -4.27 Total: -8.54 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 1.16 Total: -47.76 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.59 Total: 16.52 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.05 -6.37 -39.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204700.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.581 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds