Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47464 * 2 1 4 4 C 1.50704 * 109.47581 * 239.99691 * 2 1 3 5 5 H 1.07993 * 120.00045 * 275.01644 * 4 2 1 6 6 C 1.37877 * 119.99572 * 95.00911 * 4 2 1 7 7 N 1.31520 * 119.99678 * 184.92361 * 6 4 2 8 8 Si 1.86796 * 120.00325 * 4.92147 * 6 4 2 9 9 H 1.48496 * 109.47094 * 84.82897 * 8 6 4 10 10 H 1.48497 * 109.47175 * 204.83251 * 8 6 4 11 11 H 1.48508 * 109.47187 * 324.82808 * 8 6 4 12 12 C 1.50709 * 109.47024 * 119.99932 * 2 1 3 13 13 C 1.35339 * 125.69108 * 34.98604 * 12 2 1 14 14 N 1.36117 * 107.09564 * 179.78396 * 13 12 2 15 15 C 1.36521 * 133.69883 * 179.53595 * 14 13 12 16 16 C 1.35627 * 118.55979 * 180.44383 * 15 14 13 17 17 N 1.33370 * 120.17530 * 0.23278 * 16 15 14 18 18 N 1.28620 * 121.79752 * 0.02562 * 17 16 15 19 19 C 1.34070 * 121.07161 * 0.02562 * 18 17 16 20 20 N 1.32319 * 132.83707 * 179.97438 * 19 18 17 21 21 H 1.09003 * 109.47329 * 174.95764 * 1 2 3 22 22 H 1.08997 * 109.47302 * 294.95796 * 1 2 3 23 23 H 1.08996 * 109.47309 * 54.95975 * 1 2 3 24 24 H 0.97000 * 120.00058 * 180.02562 * 7 6 4 25 25 H 1.08005 * 126.44790 * 0.05391 * 13 12 2 26 26 H 1.08004 * 120.72422 * 0.72608 * 15 14 13 27 27 H 1.07994 * 119.91897 * 180.25295 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1353 -1.7855 -1.2290 6 6 2.3605 0.0121 -2.3579 7 7 2.7061 -0.6132 -3.4621 8 14 2.3140 1.8790 -2.3172 9 1 3.5996 2.3946 -1.7818 10 1 2.1065 2.3991 -3.6926 11 1 1.1990 2.3276 -1.4449 12 6 2.0322 -0.7104 1.2306 13 6 1.4464 -1.7785 1.8201 14 7 2.2143 -2.1149 2.8924 15 6 2.1239 -3.0830 3.8508 16 6 3.0809 -3.1370 4.8102 17 7 4.0813 -2.2550 4.8096 18 7 4.1738 -1.3358 3.9147 19 6 3.2611 -1.2257 2.9389 20 7 3.1278 -0.3899 1.9218 21 1 -0.3634 -1.0237 -0.0903 22 1 -0.3634 0.4336 0.9317 23 1 -0.3634 0.5900 -0.8414 24 1 2.9373 -0.1049 -4.2553 25 1 0.5423 -2.2737 1.4976 26 1 1.3103 -3.7934 3.8425 27 1 3.0332 -3.8965 5.5765 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261204700.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 110.126979 kcal Electronic energy + Delta-G solvation = -14024.360064 eV Core-core repulsion = 11590.990554 eV Total energy + Delta-G solvation = -2433.369510 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.33665 -40.38497 -36.63711 -35.66486 -33.74225 -32.18576 -30.49068 -27.25489 -26.50381 -25.06378 -23.90854 -21.25552 -20.03552 -19.37712 -18.64676 -17.67183 -16.84667 -16.44763 -16.01488 -15.28173 -15.06437 -14.62068 -14.41476 -14.05355 -13.34923 -12.95821 -12.84685 -12.73275 -12.57134 -12.04039 -11.78924 -11.49977 -11.32080 -11.00370 -10.74910 -10.19333 -9.30430 -8.31238 -6.35195 -1.01453 -0.10507 1.11893 1.35497 1.40815 1.47772 1.71753 2.28047 2.34766 2.35843 2.98613 3.10223 3.43657 3.66428 3.99731 4.19676 4.32084 4.62571 4.64017 4.82702 4.85340 4.93050 5.26432 5.38980 5.48711 5.61528 5.71268 6.23349 6.62176 6.68755 7.29542 7.33444 8.84913 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.049526 B = 0.007912 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.225738 B = 3538.270149 C = 3660.973448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.072 3.928 3 H 0.039 0.961 4 C -0.503 4.503 5 H 0.038 0.962 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.933 3.067 9 H -0.282 1.282 10 H -0.282 1.282 11 H -0.235 1.235 12 C 0.116 3.884 13 C -0.077 4.077 14 N -0.374 5.374 15 C 0.104 3.896 16 C -0.039 4.039 17 N -0.196 5.196 18 N -0.205 5.205 19 C 0.282 3.718 20 N -0.510 5.510 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.267 0.733 25 H 0.232 0.768 26 H 0.248 0.752 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -6.229 15.665 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.057 0.943 4 C -0.541 4.541 5 H 0.056 0.944 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.757 3.243 9 H -0.208 1.208 10 H -0.208 1.208 11 H -0.158 1.158 12 C -0.020 4.020 13 C -0.211 4.211 14 N -0.053 5.053 15 C -0.037 4.037 16 C -0.188 4.188 17 N -0.062 5.062 18 N -0.072 5.072 19 C -0.067 4.067 20 N -0.237 5.237 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.248 0.752 26 H 0.264 0.736 27 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -5.798 -5.034 15.915 17.670 hybrid contribution -1.014 -0.334 -1.072 1.513 sum -6.811 -5.368 14.843 17.191 Atomic orbital electron populations 1.21864 0.93713 1.02331 1.00582 1.17844 0.95094 0.94816 0.87083 0.94314 1.20928 1.43807 0.93838 0.95562 0.94397 1.25790 0.94007 1.03151 0.94819 1.70011 1.47783 1.37905 1.02637 0.85948 0.79969 0.80609 0.77741 1.20777 1.20763 1.15838 1.21946 0.89569 0.95054 0.95400 1.22967 1.03047 1.03631 0.91453 1.44073 1.19686 1.21829 1.19684 1.24182 1.02687 0.90967 0.85848 1.24482 0.91109 1.01710 1.01474 1.73437 1.20228 0.99186 1.13307 1.74072 1.18471 1.15929 0.98717 1.23858 0.90827 0.92536 0.99528 1.70409 1.20968 1.26657 1.05626 0.91438 0.92452 0.93139 0.92365 0.75184 0.73567 0.73381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.64 71.98 0.62 -3.96 15 2 C 0.07 3.31 2.41 -12.29 -0.03 3.28 15 3 H 0.04 1.89 5.29 -2.39 -0.01 1.87 15 4 C -0.50 -28.10 8.84 25.60 0.23 -27.87 15 5 H 0.04 2.33 8.06 -2.91 -0.02 2.30 15 6 C 0.02 1.17 5.47 84.65 0.46 1.64 15 7 N -0.94 -58.49 13.96 21.45 0.30 -58.19 15 8 Si 0.93 44.70 26.99 68.60 1.85 46.55 15 9 H -0.28 -13.87 7.11 99.48 0.71 -13.17 15 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 11 H -0.24 -10.12 6.82 99.48 0.68 -9.45 15 12 C 0.12 5.03 5.98 41.65 0.25 5.28 15 13 C -0.08 -2.49 10.95 83.36 0.91 -1.58 15 14 N -0.37 -11.26 2.95 -357.80 -1.06 -12.32 15 15 C 0.10 1.72 11.13 83.36 0.93 2.65 15 16 C -0.04 -0.65 11.21 83.85 0.94 0.29 15 17 N -0.20 -5.63 11.60 -58.32 -0.68 -6.31 15 18 N -0.21 -7.85 11.67 -59.59 -0.70 -8.55 15 19 C 0.28 11.38 9.02 261.34 2.36 13.74 15 20 N -0.51 -24.27 11.30 -187.44 -2.12 -26.39 15 21 H 0.07 2.18 7.52 -2.39 -0.02 2.16 15 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 15 25 H 0.23 5.37 7.50 -2.91 -0.02 5.35 15 26 H 0.25 0.83 8.06 -2.91 -0.02 0.80 15 27 H 0.25 1.03 8.06 -2.91 -0.02 1.01 15 Total: -1.00 -80.32 242.23 5.43 -74.89 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: 1.16 Total: -3.14 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 6.67 Total: -6.55 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -4.25 Total: -111.75 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.85 Total: 46.55 kcal Total: -80.32 5.43 -74.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204700.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.014 kcal (2) G-P(sol) polarization free energy of solvation -80.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds