Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00364 * 2 1 4 4 H 1.48496 * 109.47370 * 239.99909 * 3 2 1 5 5 H 1.48505 * 109.46690 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46950 * 119.99793 * 3 2 1 7 7 C 1.37880 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46779 * 180.02562 * 9 7 2 11 11 C 1.38146 * 119.84468 * 264.98031 * 10 9 7 12 12 C 1.38248 * 119.98267 * 179.97438 * 11 10 9 13 13 C 1.38013 * 119.95977 * 0.07346 * 12 11 10 14 14 C 1.39097 * 120.21186 * 0.05581 * 13 12 11 15 15 C 1.38413 * 119.70053 * 359.78417 * 14 13 12 16 16 C 1.50771 * 121.40057 * 180.26530 * 15 14 13 17 17 C 1.53071 * 109.67847 * 342.15759 * 16 15 14 18 18 C 1.53401 * 108.30511 * 48.21240 * 17 16 15 19 19 O 1.35924 * 118.48000 * 179.54767 * 14 13 12 20 20 H 0.96998 * 119.99558 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47349 * 60.00368 * 9 7 2 22 22 H 1.08993 * 109.47349 * 300.00042 * 9 7 2 23 23 H 1.08000 * 120.00717 * 359.95087 * 11 10 9 24 24 H 1.08003 * 120.01468 * 180.09941 * 12 11 10 25 25 H 1.07997 * 119.88934 * 180.02562 * 13 12 11 26 26 H 1.09001 * 109.43466 * 222.09183 * 16 15 14 27 27 H 1.08996 * 109.43240 * 102.22040 * 16 15 14 28 28 H 1.09002 * 109.69384 * 288.50774 * 17 16 15 29 29 H 1.08997 * 109.73105 * 167.93818 * 17 16 15 30 30 H 1.09002 * 109.68248 * 55.00338 * 18 17 16 31 31 H 1.08999 * 109.68318 * 175.52063 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.5972 -4.2354 -1.1942 12 6 3.4957 -5.2860 -1.1975 13 6 4.0241 -5.7449 -0.0080 14 6 3.6547 -5.1542 1.1960 15 6 2.7574 -4.1003 1.1960 16 6 2.3351 -3.4282 2.4778 17 6 2.6632 -4.3341 3.6672 18 6 4.1094 -4.8230 3.5160 19 8 4.1895 -5.6401 2.3472 20 1 -0.4849 0.8401 -0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6245 -2.5571 0.8896 23 1 2.1820 -3.8767 -2.1244 24 1 3.7842 -5.7472 -2.1306 25 1 4.7262 -6.5654 -0.0120 26 1 1.2621 -3.2385 2.4514 27 1 2.8674 -2.4830 2.5841 28 1 1.9858 -5.1880 3.6765 29 1 2.5602 -3.7735 4.5962 30 1 4.7771 -3.9677 3.4124 31 1 4.3932 -5.4063 4.3919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261225661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = -51.023364 kcal Electronic energy + Delta-G solvation = -14497.876392 eV Core-core repulsion = 12128.766472 eV Total energy + Delta-G solvation = -2369.109921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53019 -38.60051 -35.79324 -34.75728 -32.44752 -31.40335 -28.81064 -26.53067 -25.28939 -24.51526 -21.82384 -20.77298 -18.53981 -18.30235 -17.50015 -16.85108 -16.51371 -15.83936 -15.21383 -14.89269 -14.62897 -14.38434 -14.22030 -13.87920 -13.43543 -13.01628 -12.97927 -12.55589 -12.42735 -12.24989 -11.93132 -11.83214 -11.59762 -11.39509 -10.98971 -10.58991 -9.39362 -8.98211 -8.20574 -6.32883 0.53619 0.61410 1.38212 1.40179 1.48615 2.37921 2.45630 2.95758 3.10204 3.82595 3.89381 3.94739 4.05004 4.29184 4.37583 4.51186 4.56346 4.65220 4.73254 4.80157 4.99569 5.13181 5.16406 5.23872 5.33397 5.40346 5.47724 5.65328 5.75184 5.96527 6.07368 6.18277 6.59117 6.77940 7.34705 8.88583 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030487 B = 0.009369 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.216373 B = 2987.921954 C = 3453.561506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.520 4.520 8 H 0.049 0.951 9 C 0.059 3.941 10 C -0.037 4.037 11 C -0.173 4.173 12 C -0.082 4.082 13 C -0.173 4.173 14 C 0.117 3.883 15 C -0.175 4.175 16 C -0.072 4.072 17 C -0.151 4.151 18 C 0.057 3.943 19 O -0.327 6.327 20 H 0.265 0.735 21 H 0.000 1.000 22 H 0.012 0.988 23 H 0.116 0.884 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 -9.340 4.999 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.038 4.038 11 C -0.192 4.192 12 C -0.099 4.099 13 C -0.191 4.191 14 C 0.072 3.928 15 C -0.175 4.175 16 C -0.109 4.109 17 C -0.188 4.188 18 C -0.017 4.017 19 O -0.241 6.241 20 H 0.074 0.926 21 H 0.018 0.982 22 H 0.030 0.970 23 H 0.134 0.866 24 H 0.175 0.825 25 H 0.167 0.833 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.783 -9.403 5.044 13.208 hybrid contribution -0.273 1.424 -0.172 1.460 sum 7.511 -7.979 4.872 11.992 Atomic orbital electron populations 1.70066 1.07544 1.27931 1.51251 1.25854 0.95711 1.02804 0.94678 0.85566 0.78375 0.78429 0.79117 1.19490 1.20515 1.19245 1.21180 0.92697 0.90978 1.50911 0.93255 1.18116 0.92804 0.90942 0.95923 1.20272 0.96017 0.94594 0.92881 1.21095 1.01793 0.98959 0.97315 1.21149 0.95144 0.95237 0.98404 1.20740 1.04756 1.04140 0.89504 1.18849 0.93242 0.93836 0.86879 1.19818 1.01488 0.99957 0.96287 1.20360 1.01238 0.97952 0.91382 1.22240 0.97483 1.00227 0.98866 1.23203 0.96391 0.95707 0.86413 1.85930 1.75906 1.45428 1.16861 0.92584 0.98192 0.97009 0.86564 0.82479 0.83324 0.91932 0.91871 0.90792 0.87673 0.92072 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.52 -29.71 9.06 25.60 0.23 -29.48 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.06 3.19 4.57 29.10 0.13 3.32 16 10 C -0.04 -1.73 5.07 -19.83 -0.10 -1.83 16 11 C -0.17 -7.01 9.67 22.25 0.22 -6.80 16 12 C -0.08 -2.65 10.04 22.22 0.22 -2.43 16 13 C -0.17 -5.61 9.94 22.42 0.22 -5.38 16 14 C 0.12 4.25 6.47 22.52 0.15 4.40 16 15 C -0.17 -7.25 5.75 -19.75 -0.11 -7.36 16 16 C -0.07 -2.77 5.16 29.89 0.15 -2.62 16 17 C -0.15 -4.13 6.19 30.75 0.19 -3.94 16 18 C 0.06 1.43 7.02 72.12 0.51 1.93 16 19 O -0.33 -10.33 10.28 -92.70 -0.95 -11.28 16 20 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 21 H 0.00 -0.01 8.05 -2.39 -0.02 -0.03 16 22 H 0.01 0.67 6.25 -2.39 -0.01 0.66 16 23 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 24 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 25 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 26 H 0.06 2.64 6.43 -2.39 -0.02 2.63 16 27 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -65.63 260.48 4.74 -60.89 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.11 Total: 8.81 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 2.27 Total: -49.28 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.95 Total: -11.28 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.63 4.74 -60.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.866 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds