Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00395 * 2 1 4 4 H 1.48496 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47111 * 300.00004 * 3 2 1 6 6 H 1.48501 * 109.47040 * 59.99787 * 3 2 1 7 7 C 1.37884 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47448 * 179.97438 * 9 7 2 11 11 C 1.38268 * 120.06492 * 89.99564 * 10 9 7 12 12 C 1.38054 * 119.88854 * 180.12432 * 11 10 9 13 13 C 1.38643 * 120.30546 * 359.97438 * 12 11 10 14 14 C 1.37668 * 119.61829 * 0.02562 * 13 12 11 15 15 C 1.37401 * 120.12448 * 270.30234 * 10 9 7 16 16 C 1.50751 * 121.29460 * 180.39699 * 14 13 12 17 17 C 1.52973 * 109.76416 * 343.00605 * 16 14 13 18 18 O 1.43218 * 108.47775 * 49.15634 * 17 16 14 19 19 C 1.42720 * 113.12265 * 289.28566 * 18 17 16 20 20 H 0.96998 * 119.99076 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47506 * 60.00043 * 9 7 2 22 22 H 1.09003 * 109.47357 * 299.99890 * 9 7 2 23 23 H 1.07994 * 120.05393 * 0.10579 * 11 10 9 24 24 H 1.08002 * 119.84441 * 179.97438 * 12 11 10 25 25 H 1.08002 * 119.70361 * 359.69670 * 15 10 9 26 26 H 1.08991 * 109.42029 * 222.90954 * 16 14 13 27 27 H 1.09007 * 109.41901 * 103.09057 * 16 14 13 28 28 H 1.09002 * 109.63112 * 289.46525 * 17 16 14 29 29 H 1.08993 * 109.79962 * 168.95657 * 17 16 14 30 30 H 1.09002 * 109.33999 * 172.01529 * 19 18 17 31 31 H 1.09003 * 109.34434 * 291.69331 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6803 -4.1712 1.1972 12 6 3.5792 -5.2189 1.1929 13 6 4.0329 -5.7467 -0.0062 14 6 3.5822 -5.2195 -1.1954 15 6 2.6829 -4.1648 -1.1879 16 6 4.0436 -5.7699 -2.5208 17 6 5.3067 -6.6093 -2.3208 18 8 5.0772 -7.5253 -1.2440 19 6 5.0164 -6.8873 0.0312 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 2.3294 -3.7633 2.1336 24 1 3.9307 -5.6294 2.1281 25 1 2.3302 -3.7522 -2.1216 26 1 4.2600 -4.9454 -3.2000 27 1 3.2579 -6.3933 -2.9477 28 1 6.1447 -5.9571 -2.0745 29 1 5.5297 -7.1638 -3.2322 30 1 4.7011 -7.6114 0.7825 31 1 6.0035 -6.5045 0.2908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = -41.018893 kcal Electronic energy + Delta-G solvation = -14085.768653 eV Core-core repulsion = 11717.092559 eV Total energy + Delta-G solvation = -2368.676094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.87841 -37.39548 -33.55533 -32.68742 -31.62990 -29.08122 -27.90477 -24.83918 -23.60468 -22.43222 -21.48312 -19.00214 -16.59940 -16.31468 -16.09977 -15.45013 -14.81001 -14.41462 -14.05314 -13.68614 -13.25745 -12.84930 -12.38920 -12.32934 -11.89990 -11.66827 -11.28729 -11.04655 -10.75728 -10.72666 -10.53290 -10.20260 -9.83684 -9.43196 -9.31586 -8.45855 -8.14587 -7.72968 -6.07452 -4.11407 1.95429 2.00671 3.26900 3.34560 3.39555 3.93933 4.30208 4.47834 4.93430 5.04071 5.08743 5.27089 5.31466 5.38535 5.47555 5.64849 5.69134 5.78865 5.98109 6.02994 6.20764 6.30730 6.57893 6.67849 6.94278 7.15172 7.16548 7.23141 7.47341 7.69372 7.82093 7.88634 8.28685 8.94142 9.52597 11.02542 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.046496 B = 0.006594 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.058311 B = 4244.951282 C = 4397.730282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.029 4.029 11 C -0.123 4.123 12 C -0.115 4.115 13 C -0.155 4.155 14 C -0.078 4.078 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.061 3.939 18 O -0.381 6.381 19 C 0.110 3.890 20 H 0.262 0.738 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 -11.151 -1.889 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.029 4.029 11 C -0.141 4.141 12 C -0.133 4.133 13 C -0.155 4.155 14 C -0.078 4.078 15 C -0.140 4.140 16 C -0.149 4.149 17 C -0.016 4.016 18 O -0.300 6.300 19 C 0.033 3.967 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.137 0.863 24 H 0.131 0.869 25 H 0.136 0.864 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.413 -11.235 -1.917 14.166 hybrid contribution 0.355 1.411 0.109 1.459 sum 8.767 -9.824 -1.808 13.291 Atomic orbital electron populations 1.69970 1.06046 1.26748 1.50530 1.25020 0.94889 0.99287 0.95157 0.86478 0.80123 0.83448 0.77677 1.19681 1.20891 1.20884 1.21089 0.93065 0.89841 1.50964 0.92446 1.18373 0.92591 0.89634 0.98415 1.20515 0.95684 0.94735 0.91946 1.21056 0.98165 0.96424 0.98501 1.20836 0.98457 0.97618 0.96422 1.19856 1.01962 1.00108 0.93578 1.19288 0.98245 0.96619 0.93630 1.20816 0.98247 0.96333 0.98646 1.21062 0.98524 0.99846 0.95471 1.22591 0.96216 0.92332 0.90440 1.88000 1.93242 1.33406 1.15330 1.21312 0.96534 0.93181 0.85639 0.92855 0.95315 0.95256 0.86277 0.86924 0.86432 0.89997 0.90208 0.92873 0.88780 0.88465 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.21 5.10 -29.04 -0.15 1.06 16 10 C -0.03 -0.64 5.05 -104.92 -0.53 -1.17 16 11 C -0.12 -2.44 9.71 -39.64 -0.38 -2.83 16 12 C -0.12 -1.95 9.67 -39.50 -0.38 -2.33 16 13 C -0.15 -2.57 5.79 -104.70 -0.61 -3.18 16 14 C -0.08 -1.36 5.77 -104.67 -0.60 -1.96 16 15 C -0.12 -2.46 9.29 -39.75 -0.37 -2.82 16 16 C -0.11 -1.55 6.01 -27.87 -0.17 -1.72 16 17 C 0.06 0.74 6.85 37.14 0.25 1.00 16 18 O -0.38 -5.43 10.80 -35.23 -0.38 -5.81 16 19 C 0.11 1.49 6.67 35.99 0.24 1.73 16 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 22 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 23 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 24 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 28 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 264.57 15.07 3.99 3.99 Total: -1.00 -30.47 264.57 -7.97 -38.44 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.18 Total: -2.03 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -3.11 Total: -25.38 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.38 Total: -5.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.47 -7.97 -38.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.580 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds