Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 120.02067 * 2 1 4 4 C 1.38109 * 119.98071 * 179.97438 * 3 2 1 5 5 C 1.38504 * 120.31942 * 359.97438 * 4 3 2 6 6 C 1.38373 * 119.82589 * 0.11953 * 5 4 3 7 7 C 1.37964 * 120.01713 * 180.02562 * 2 1 3 8 8 O 1.35845 * 121.80515 * 179.52987 * 6 5 4 9 9 C 1.42830 * 117.85436 * 17.26787 * 8 6 5 10 10 C 1.53412 * 108.37082 * 310.79126 * 9 8 6 11 11 C 1.50762 * 118.77083 * 180.17550 * 5 4 3 12 12 H 1.08999 * 109.43974 * 77.75107 * 11 5 4 13 13 C 1.50704 * 109.43571 * 317.84134 * 11 5 4 14 14 H 1.08001 * 119.99833 * 335.20376 * 13 11 5 15 15 C 1.37870 * 120.00346 * 155.20131 * 13 11 5 16 16 N 1.31516 * 120.00063 * 355.23594 * 15 13 11 17 17 Si 1.86801 * 120.00126 * 175.23877 * 15 13 11 18 18 H 1.48495 * 109.47212 * 90.00181 * 17 15 13 19 19 H 1.48503 * 109.46920 * 209.99967 * 17 15 13 20 20 H 1.48499 * 109.47226 * 329.99736 * 17 15 13 21 21 H 1.08999 * 109.46675 * 89.99715 * 1 2 3 22 22 H 1.08997 * 109.47348 * 210.00360 * 1 2 3 23 23 H 1.09004 * 109.46494 * 330.00585 * 1 2 3 24 24 H 1.08002 * 120.01075 * 359.97344 * 3 2 1 25 25 H 1.08004 * 119.83672 * 180.02562 * 4 3 2 26 26 H 1.08000 * 119.89745 * 359.93945 * 7 2 1 27 27 H 1.08997 * 109.68278 * 70.51428 * 9 8 6 28 28 H 1.09009 * 109.68260 * 191.03379 * 9 8 6 29 29 H 1.08997 * 109.70170 * 305.00764 * 10 9 8 30 30 H 1.09007 * 109.69139 * 184.41589 * 10 9 8 31 31 H 0.96999 * 119.99624 * 5.27762 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.1973 0.0000 4 6 3.5800 1.1964 0.0005 5 6 4.2784 0.0003 0.0016 6 6 3.5887 -1.1993 -0.0004 7 6 2.1972 -1.1946 -0.0005 8 8 4.2327 -2.3954 -0.0089 9 6 5.6127 -2.4129 0.3591 10 6 6.3384 -1.3180 -0.4334 11 6 5.7855 0.0400 0.0062 12 1 6.1393 0.2666 1.0119 13 6 6.2619 1.1071 -0.9453 14 1 5.6351 1.4150 -1.7691 15 6 7.4979 1.6905 -0.7641 16 7 8.2213 1.3842 0.2907 17 14 8.1451 2.9158 -2.0167 18 1 7.7187 4.2860 -1.6349 19 1 9.6283 2.8509 -2.0521 20 1 7.6031 2.5846 -3.3590 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3632 0.8901 0.5138 24 1 1.6594 2.1330 -0.0004 25 1 4.1180 2.1329 0.0010 26 1 1.6558 -2.1291 0.0000 27 1 5.7103 -2.2190 1.4272 28 1 6.0437 -3.3856 0.1217 29 1 6.1626 -1.4585 -1.4999 30 1 7.4079 -1.3633 -0.2277 31 1 7.9208 0.6925 0.9006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289363.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = -36.738175 kcal Electronic energy + Delta-G solvation = -14580.834412 eV Core-core repulsion = 12212.343944 eV Total energy + Delta-G solvation = -2368.490468 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95653 -37.13276 -34.81548 -31.96573 -31.09817 -29.52183 -27.27708 -25.14803 -23.43136 -21.96598 -21.45992 -19.07814 -17.02840 -16.44575 -15.83678 -15.42369 -14.27431 -13.78772 -13.65726 -13.42556 -13.30432 -13.21506 -12.37344 -12.25711 -11.86298 -11.63607 -11.18580 -10.94574 -10.87373 -10.48935 -10.20891 -10.17053 -10.02054 -9.50564 -8.64738 -8.50010 -7.93671 -7.38610 -6.42786 -4.16433 2.01304 2.09211 3.38505 3.42456 3.58067 3.92359 4.37615 4.49941 5.22579 5.31428 5.43515 5.58635 5.63078 5.72530 5.77834 5.81175 5.86181 5.99450 6.03140 6.14456 6.34668 6.54907 6.66457 6.77838 6.91533 7.04270 7.18667 7.26146 7.49405 7.55365 8.06331 8.14519 8.36129 8.77657 9.54207 10.93154 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031761 B = 0.009919 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.359578 B = 2822.047023 C = 3501.074709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.081 4.081 3 C -0.163 4.163 4 C -0.066 4.066 5 C -0.117 4.117 6 C 0.116 3.884 7 C -0.161 4.161 8 O -0.326 6.326 9 C 0.057 3.943 10 C -0.147 4.147 11 C 0.062 3.938 12 H 0.046 0.954 13 C -0.584 4.584 14 H 0.053 0.947 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 1.069 2.931 18 H -0.287 1.287 19 H -0.284 1.284 20 H -0.288 1.288 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.113 0.887 25 H 0.130 0.870 26 H 0.117 0.883 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 -3.468 0.071 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 C -0.182 4.182 4 C -0.084 4.084 5 C -0.118 4.118 6 C 0.071 3.929 7 C -0.179 4.179 8 O -0.241 6.241 9 C -0.018 4.018 10 C -0.186 4.186 11 C 0.044 3.956 12 H 0.064 0.936 13 C -0.622 4.622 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.546 5.546 17 Si 0.897 3.103 18 H -0.213 1.213 19 H -0.210 1.210 20 H -0.214 1.214 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.131 0.869 25 H 0.148 0.852 26 H 0.135 0.865 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.094 -2.627 -0.293 8.515 hybrid contribution -0.986 -0.954 0.310 1.406 sum -9.080 -3.580 0.018 9.760 Atomic orbital electron populations 1.20683 0.91700 1.02040 1.01718 1.19443 0.95219 0.92612 1.00881 1.20875 0.94425 0.96822 1.06041 1.21087 0.92854 0.98494 0.95948 1.20495 0.98374 0.91457 1.01445 1.18811 0.91140 0.84731 0.98219 1.20228 0.91098 0.97789 1.08811 1.85851 1.25511 1.28460 1.84285 1.23057 0.79310 1.00670 0.98748 1.22460 1.00241 0.96023 0.99838 1.17941 0.86047 0.93364 0.98254 0.93630 1.21858 1.04295 1.22381 1.13668 0.92820 1.25856 0.93792 0.99733 0.98894 1.70792 1.41161 1.30918 1.11765 0.83532 0.76265 0.75539 0.74920 1.21343 1.20964 1.21361 0.91734 0.92103 0.91941 0.86905 0.85167 0.86498 0.92867 0.88988 0.91735 0.91145 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.08 -1.38 5.87 -104.70 -0.61 -2.00 16 3 C -0.16 -2.96 9.70 -39.61 -0.38 -3.34 16 4 C -0.07 -1.40 8.98 -39.53 -0.36 -1.76 16 5 C -0.12 -2.67 5.42 -104.44 -0.57 -3.24 16 6 C 0.12 2.46 6.47 -39.19 -0.25 2.20 16 7 C -0.16 -2.98 9.59 -39.34 -0.38 -3.35 16 8 O -0.33 -6.71 10.27 -19.25 -0.20 -6.90 16 9 C 0.06 1.08 7.03 37.37 0.26 1.34 16 10 C -0.15 -3.28 5.49 -26.48 -0.15 -3.43 16 11 C 0.06 1.54 2.01 -92.86 -0.19 1.36 16 12 H 0.05 1.21 6.68 -51.93 -0.35 0.87 16 13 C -0.58 -15.81 7.10 -34.44 -0.24 -16.06 16 14 H 0.05 1.49 7.63 -52.49 -0.40 1.08 16 15 C 0.02 0.59 5.45 -17.82 -0.10 0.49 16 16 N -0.91 -26.39 13.63 55.43 0.76 -25.63 16 17 Si 1.07 24.61 29.91 -169.99 -5.08 19.52 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.28 16 24 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.13 2.87 7.36 -52.48 -0.39 2.48 16 26 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 1.45 8.14 -51.92 -0.42 1.02 16 29 H 0.06 1.49 8.10 -51.93 -0.42 1.07 16 30 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.27 7.72 6.66 -40.82 -0.27 7.45 16 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -29.35 259.54 -7.22 -36.57 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.00 Total: 1.27 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -2.60 Total: -28.73 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.76 Total: -25.63 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.20 Total: -6.90 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.35 -7.22 -36.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289363.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.169 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds