Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 120.02067 * 2 1 4 4 C 1.38109 * 119.98071 * 179.97438 * 3 2 1 5 5 C 1.38504 * 120.31942 * 359.97438 * 4 3 2 6 6 C 1.38373 * 119.82589 * 0.11953 * 5 4 3 7 7 C 1.37964 * 120.01713 * 180.02562 * 2 1 3 8 8 O 1.35845 * 121.80515 * 179.52987 * 6 5 4 9 9 C 1.42830 * 117.85436 * 17.26787 * 8 6 5 10 10 C 1.53412 * 108.37082 * 310.79126 * 9 8 6 11 11 C 1.50762 * 118.77083 * 180.17550 * 5 4 3 12 12 H 1.08999 * 109.43974 * 77.75107 * 11 5 4 13 13 C 1.50704 * 109.43571 * 317.84134 * 11 5 4 14 14 H 1.08001 * 119.99833 * 335.20376 * 13 11 5 15 15 C 1.37870 * 120.00346 * 155.20131 * 13 11 5 16 16 N 1.31516 * 120.00063 * 355.23594 * 15 13 11 17 17 Si 1.86801 * 120.00126 * 175.23877 * 15 13 11 18 18 H 1.48495 * 109.47212 * 90.00181 * 17 15 13 19 19 H 1.48503 * 109.46920 * 209.99967 * 17 15 13 20 20 H 1.48499 * 109.47226 * 329.99736 * 17 15 13 21 21 H 1.08999 * 109.46675 * 89.99715 * 1 2 3 22 22 H 1.08997 * 109.47348 * 210.00360 * 1 2 3 23 23 H 1.09004 * 109.46494 * 330.00585 * 1 2 3 24 24 H 1.08002 * 120.01075 * 359.97344 * 3 2 1 25 25 H 1.08004 * 119.83672 * 180.02562 * 4 3 2 26 26 H 1.08000 * 119.89745 * 359.93945 * 7 2 1 27 27 H 1.08997 * 109.68278 * 70.51428 * 9 8 6 28 28 H 1.09009 * 109.68260 * 191.03379 * 9 8 6 29 29 H 1.08997 * 109.70170 * 305.00764 * 10 9 8 30 30 H 1.09007 * 109.69139 * 184.41589 * 10 9 8 31 31 H 0.96999 * 119.99624 * 5.27762 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.1973 0.0000 4 6 3.5800 1.1964 0.0005 5 6 4.2784 0.0003 0.0016 6 6 3.5887 -1.1993 -0.0004 7 6 2.1972 -1.1946 -0.0005 8 8 4.2327 -2.3954 -0.0089 9 6 5.6127 -2.4129 0.3591 10 6 6.3384 -1.3180 -0.4334 11 6 5.7855 0.0400 0.0062 12 1 6.1393 0.2666 1.0119 13 6 6.2619 1.1071 -0.9453 14 1 5.6351 1.4150 -1.7691 15 6 7.4979 1.6905 -0.7641 16 7 8.2213 1.3842 0.2907 17 14 8.1451 2.9158 -2.0167 18 1 7.7187 4.2860 -1.6349 19 1 9.6283 2.8509 -2.0521 20 1 7.6031 2.5846 -3.3590 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3632 0.8901 0.5138 24 1 1.6594 2.1330 -0.0004 25 1 4.1180 2.1329 0.0010 26 1 1.6558 -2.1291 0.0000 27 1 5.7103 -2.2190 1.4272 28 1 6.0437 -3.3856 0.1217 29 1 6.1626 -1.4585 -1.4999 30 1 7.4079 -1.3633 -0.2277 31 1 7.9208 0.6925 0.9006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289363.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -53.140621 kcal Electronic energy + Delta-G solvation = -14581.545676 eV Core-core repulsion = 12212.343944 eV Total energy + Delta-G solvation = -2369.201732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55234 -38.62657 -36.69449 -33.71816 -32.70494 -31.08329 -28.80451 -26.88345 -25.16071 -23.68870 -23.02305 -20.73723 -18.99143 -18.00623 -17.47793 -17.03868 -15.87741 -15.66261 -15.42504 -14.96410 -14.73800 -14.46525 -14.12221 -13.72960 -13.38711 -12.98396 -12.91107 -12.69806 -12.50775 -12.09935 -11.97639 -11.86557 -11.67902 -11.28406 -10.59833 -10.57071 -9.50871 -9.00129 -8.59712 -6.36201 0.48647 0.54500 1.50250 1.58186 1.76311 2.39542 2.52491 2.87711 3.13812 3.95453 3.99657 4.03331 4.09957 4.20344 4.32200 4.38384 4.47585 4.64936 4.72468 4.87780 4.90642 4.93609 5.05769 5.18991 5.31116 5.34838 5.48045 5.70209 5.83521 5.97511 6.05293 6.16027 6.50202 6.62454 7.41085 8.73444 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031761 B = 0.009919 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.359578 B = 2822.047023 C = 3501.074709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.068 4.068 3 C -0.160 4.160 4 C -0.087 4.087 5 C -0.154 4.154 6 C 0.098 3.902 7 C -0.162 4.162 8 O -0.328 6.328 9 C 0.064 3.936 10 C -0.141 4.141 11 C 0.059 3.941 12 H 0.014 0.986 13 C -0.589 4.589 14 H 0.041 0.959 15 C -0.026 4.026 16 N -0.935 5.935 17 Si 1.113 2.887 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.275 1.275 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.109 0.891 26 H 0.144 0.856 27 H 0.057 0.943 28 H 0.131 0.869 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 -3.908 -0.464 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.068 4.068 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.155 4.155 6 C 0.054 3.946 7 C -0.180 4.180 8 O -0.243 6.243 9 C -0.011 4.011 10 C -0.179 4.179 11 C 0.040 3.960 12 H 0.032 0.968 13 C -0.626 4.626 14 H 0.059 0.941 15 C -0.224 4.224 16 N -0.573 5.573 17 Si 0.935 3.065 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.200 1.200 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.161 0.839 25 H 0.127 0.873 26 H 0.162 0.838 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.512 -3.076 -0.822 10.984 hybrid contribution -0.368 -0.824 0.499 1.032 sum -10.880 -3.901 -0.323 11.563 Atomic orbital electron populations 1.20789 0.87765 1.03966 1.03364 1.20012 0.97871 0.91344 0.97615 1.21195 0.92982 0.98964 1.04633 1.21067 0.94622 0.97202 0.97591 1.20404 0.97219 0.93103 1.04776 1.19084 0.92419 0.84187 0.98927 1.20643 0.89965 0.99688 1.07709 1.85842 1.25824 1.28171 1.84454 1.23120 0.78529 1.01116 0.98321 1.22256 0.99825 0.96309 0.99493 1.17840 0.88126 0.94031 0.95958 0.96803 1.22074 1.04096 1.22989 1.13480 0.94075 1.27171 0.94218 1.01269 0.99751 1.70896 1.41867 1.31704 1.12794 0.82974 0.75846 0.74266 0.73413 1.19882 1.20719 1.19993 0.89998 0.90262 0.90090 0.83875 0.87307 0.83843 0.92472 0.85122 0.93010 0.92329 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.01 71.24 0.71 -1.33 16 2 C -0.07 -2.09 5.87 -19.92 -0.12 -2.20 16 3 C -0.16 -5.47 9.70 22.25 0.22 -5.26 16 4 C -0.09 -3.76 8.98 22.30 0.20 -3.56 16 5 C -0.15 -7.23 5.42 -19.75 -0.11 -7.33 16 6 C 0.10 4.12 6.47 22.52 0.15 4.26 16 7 C -0.16 -5.56 9.59 22.42 0.22 -5.34 16 8 O -0.33 -13.13 10.27 -91.81 -0.94 -14.07 16 9 C 0.06 2.38 7.03 72.12 0.51 2.89 16 10 C -0.14 -6.46 5.49 30.75 0.17 -6.29 16 11 C 0.06 3.06 2.01 -12.24 -0.02 3.03 16 12 H 0.01 0.80 6.68 -2.39 -0.02 0.78 16 13 C -0.59 -33.19 7.10 25.60 0.18 -33.01 16 14 H 0.04 2.36 7.63 -2.91 -0.02 2.34 16 15 C -0.03 -1.46 5.45 84.65 0.46 -1.00 16 16 N -0.94 -56.24 13.63 21.44 0.29 -55.95 16 17 Si 1.11 50.28 29.91 68.60 2.05 52.33 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 23 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 24 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 25 H 0.11 5.05 7.36 -2.91 -0.02 5.02 16 26 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.13 3.84 8.14 -2.38 -0.02 3.82 16 29 H 0.05 2.46 8.10 -2.39 -0.02 2.44 16 30 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 31 H 0.26 15.64 6.66 -92.71 -0.62 15.03 16 Total: -1.00 -65.50 259.54 5.22 -60.28 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.26 Total: 12.57 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 2.56 Total: -55.15 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.29 Total: -55.95 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.94 Total: -14.07 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -65.50 5.22 -60.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289363.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.139 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds