Wall clock time and date at job start Mon Mar 30 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48500 * 109.47199 * 269.99525 * 3 2 1 5 5 H 1.48497 * 109.47654 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47142 * 150.00359 * 3 2 1 7 7 C 1.37877 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.50708 * 109.46809 * 179.97438 * 9 7 2 11 11 C 1.38104 * 119.86340 * 264.99839 * 10 9 7 12 12 C 1.38213 * 119.86289 * 179.97438 * 11 10 9 13 13 C 1.38100 * 119.89792 * 0.09725 * 12 11 10 14 14 C 1.38591 * 120.29915 * 359.97438 * 13 12 11 15 15 C 1.37952 * 119.77967 * 359.84626 * 14 13 12 16 16 C 1.51199 * 121.42554 * 180.48747 * 15 14 13 17 17 C 1.52975 * 109.51248 * 343.03047 * 16 15 14 18 18 O 1.43210 * 108.64357 * 49.17868 * 17 16 15 19 19 C 1.42725 * 113.14202 * 289.20946 * 18 17 16 20 20 H 0.97000 * 120.00365 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47024 * 60.00098 * 9 7 2 22 22 H 1.08998 * 109.47309 * 299.99541 * 9 7 2 23 23 H 1.08008 * 120.07154 * 0.02562 * 11 10 9 24 24 H 1.08005 * 120.05086 * 180.11413 * 12 11 10 25 25 H 1.08001 * 119.84707 * 179.97438 * 13 12 11 26 26 H 1.09003 * 109.67940 * 222.93527 * 16 15 14 27 27 H 1.09002 * 109.41883 * 102.96485 * 16 15 14 28 28 H 1.09002 * 109.63645 * 289.37858 * 17 16 15 29 29 H 1.08999 * 109.63529 * 168.97533 * 17 16 15 30 30 H 1.08995 * 109.33751 * 172.01520 * 19 18 17 31 31 H 1.09001 * 109.34303 * 291.69527 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.5979 -4.2352 -1.1926 12 6 3.4964 -5.2853 -1.1926 13 6 4.0220 -5.7416 0.0002 14 6 3.6529 -5.1509 1.1983 15 6 2.7588 -4.1004 1.1975 16 6 2.3388 -3.4216 2.4816 17 6 2.6912 -4.3162 3.6714 18 8 4.0520 -4.7418 3.5370 19 6 4.2443 -5.6802 2.4789 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.1846 -3.8766 -2.1238 24 1 3.7874 -5.7482 -2.1241 25 1 4.7237 -6.5626 -0.0008 26 1 1.2635 -3.2434 2.4680 27 1 2.8618 -2.4699 2.5763 28 1 2.0346 -5.1863 3.6826 29 1 2.5725 -3.7559 4.5988 30 1 5.3114 -5.8529 2.3393 31 1 3.7571 -6.6204 2.7372 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261290441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:47 Heat of formation + Delta-G solvation = -38.387677 kcal Electronic energy + Delta-G solvation = -14467.738949 eV Core-core repulsion = 12099.176953 eV Total energy + Delta-G solvation = -2368.561996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.77833 -37.18173 -33.82403 -32.23745 -31.33911 -29.65768 -26.92312 -25.09241 -23.46706 -23.17657 -19.92886 -19.54714 -16.39129 -16.31846 -15.96188 -15.34082 -14.83711 -14.55598 -13.93316 -13.44977 -13.08117 -12.53088 -12.34021 -12.12233 -11.80093 -11.56534 -11.26831 -11.03753 -10.79928 -10.56610 -10.39704 -10.17334 -9.59360 -9.44076 -9.19979 -8.43490 -7.99997 -7.74570 -6.06384 -4.09761 1.93786 2.07617 3.29182 3.35693 3.40410 4.13568 4.33171 4.49308 5.09776 5.21966 5.28146 5.40211 5.48788 5.56688 5.57629 5.67526 5.75218 6.01365 6.10454 6.28046 6.34754 6.50963 6.74499 6.80910 6.98433 7.13757 7.19472 7.39275 7.48655 7.71345 7.81717 7.89781 8.30023 8.95160 9.54047 11.03387 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.009368 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.691584 B = 2988.200004 C = 3469.422603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.047 3.953 10 C -0.034 4.034 11 C -0.124 4.124 12 C -0.126 4.126 13 C -0.142 4.142 14 C -0.130 4.130 15 C -0.073 4.073 16 C -0.107 4.107 17 C 0.058 3.942 18 O -0.381 6.381 19 C 0.108 3.892 20 H 0.262 0.738 21 H 0.026 0.974 22 H 0.033 0.967 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 -10.020 3.294 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.034 4.034 11 C -0.142 4.142 12 C -0.144 4.144 13 C -0.160 4.160 14 C -0.131 4.131 15 C -0.073 4.073 16 C -0.144 4.144 17 C -0.018 4.018 18 O -0.299 6.299 19 C 0.031 3.969 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.110 -9.831 3.424 11.597 hybrid contribution 0.246 0.889 -0.439 1.022 sum 5.355 -8.942 2.984 10.842 Atomic orbital electron populations 1.69951 1.05989 1.26806 1.50562 1.24988 0.94861 0.99169 0.95202 0.86565 0.79916 0.83235 0.78205 1.20625 1.21148 1.19758 1.20998 0.92971 0.89718 1.50887 0.92586 1.18391 0.92562 0.89618 0.98344 1.20626 0.96269 0.95224 0.91330 1.21065 0.98622 0.96374 0.98163 1.20943 0.98383 0.97848 0.97198 1.20651 1.02076 1.01149 0.92114 1.20099 0.99366 0.98127 0.95483 1.19424 0.97062 0.95489 0.95364 1.21137 1.02956 0.99259 0.91062 1.22709 0.82758 0.97502 0.98847 1.88003 1.27730 1.62393 1.51821 1.21303 1.00478 0.90907 0.84184 0.92851 0.95539 0.94902 0.86432 0.86996 0.87126 0.89172 0.89133 0.93288 0.88795 0.88567 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.06 9.05 -34.44 -0.31 -14.37 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.21 4.57 -29.03 -0.13 1.07 16 10 C -0.03 -0.76 5.07 -104.55 -0.53 -1.29 16 11 C -0.12 -2.47 9.67 -39.64 -0.38 -2.85 16 12 C -0.13 -2.13 10.05 -39.64 -0.40 -2.53 16 13 C -0.14 -2.30 9.67 -39.50 -0.38 -2.69 16 14 C -0.13 -2.31 5.80 -104.62 -0.61 -2.91 16 15 C -0.07 -1.48 5.79 -104.37 -0.60 -2.09 16 16 C -0.11 -2.03 5.31 -27.65 -0.15 -2.17 16 17 C 0.06 0.90 6.83 37.14 0.25 1.15 16 18 O -0.38 -6.33 10.80 -35.23 -0.38 -6.71 16 19 C 0.11 1.60 6.66 35.99 0.24 1.84 16 20 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 21 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 22 H 0.03 0.86 6.28 -51.93 -0.33 0.54 16 23 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 24 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 25 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.09 1.74 6.50 -51.93 -0.34 1.40 16 27 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 28 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -29.92 260.56 -7.84 -37.76 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.00 Total: -0.88 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -3.10 Total: -25.28 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.31 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.38 Total: -6.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.92 -7.84 -37.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.630 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds