Wall clock time and date at job start Mon Mar 30 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48500 * 109.47199 * 269.99525 * 3 2 1 5 5 H 1.48497 * 109.47654 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47142 * 150.00359 * 3 2 1 7 7 C 1.37877 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.50708 * 109.46809 * 179.97438 * 9 7 2 11 11 C 1.38104 * 119.86340 * 264.99839 * 10 9 7 12 12 C 1.38213 * 119.86289 * 179.97438 * 11 10 9 13 13 C 1.38100 * 119.89792 * 0.09725 * 12 11 10 14 14 C 1.38591 * 120.29915 * 359.97438 * 13 12 11 15 15 C 1.37952 * 119.77967 * 359.84626 * 14 13 12 16 16 C 1.51199 * 121.42554 * 180.48747 * 15 14 13 17 17 C 1.52975 * 109.51248 * 343.03047 * 16 15 14 18 18 O 1.43210 * 108.64357 * 49.17868 * 17 16 15 19 19 C 1.42725 * 113.14202 * 289.20946 * 18 17 16 20 20 H 0.97000 * 120.00365 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47024 * 60.00098 * 9 7 2 22 22 H 1.08998 * 109.47309 * 299.99541 * 9 7 2 23 23 H 1.08008 * 120.07154 * 0.02562 * 11 10 9 24 24 H 1.08005 * 120.05086 * 180.11413 * 12 11 10 25 25 H 1.08001 * 119.84707 * 179.97438 * 13 12 11 26 26 H 1.09003 * 109.67940 * 222.93527 * 16 15 14 27 27 H 1.09002 * 109.41883 * 102.96485 * 16 15 14 28 28 H 1.09002 * 109.63645 * 289.37858 * 17 16 15 29 29 H 1.08999 * 109.63529 * 168.97533 * 17 16 15 30 30 H 1.08995 * 109.33751 * 172.01520 * 19 18 17 31 31 H 1.09001 * 109.34303 * 291.69527 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.5979 -4.2352 -1.1926 12 6 3.4964 -5.2853 -1.1926 13 6 4.0220 -5.7416 0.0002 14 6 3.6529 -5.1509 1.1983 15 6 2.7588 -4.1004 1.1975 16 6 2.3388 -3.4216 2.4816 17 6 2.6912 -4.3162 3.6714 18 8 4.0520 -4.7418 3.5370 19 6 4.2443 -5.6802 2.4789 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.1846 -3.8766 -2.1238 24 1 3.7874 -5.7482 -2.1241 25 1 4.7237 -6.5626 -0.0008 26 1 1.2635 -3.2434 2.4680 27 1 2.8618 -2.4699 2.5763 28 1 2.0346 -5.1863 3.6826 29 1 2.5725 -3.7559 4.5988 30 1 5.3114 -5.8529 2.3393 31 1 3.7571 -6.6204 2.7372 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261290441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:47 Heat of formation + Delta-G solvation = -55.864833 kcal Electronic energy + Delta-G solvation = -14468.496815 eV Core-core repulsion = 12099.176953 eV Total energy + Delta-G solvation = -2369.319863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.15843 -38.52324 -35.67310 -33.96675 -32.83869 -31.14561 -28.75128 -26.37551 -25.28892 -24.67255 -21.50824 -20.92426 -18.55315 -17.65374 -17.32426 -16.68495 -16.53530 -16.09191 -15.36708 -14.90966 -14.65633 -14.23111 -14.00116 -13.57614 -13.41603 -13.08920 -12.93408 -12.79849 -12.40571 -12.29072 -12.19725 -11.61378 -11.45832 -11.25176 -10.61385 -10.55518 -9.41084 -9.31417 -8.22232 -6.34441 0.49969 0.61465 1.36582 1.36871 1.48684 2.36963 2.89940 3.00302 3.08299 3.84804 3.87667 4.06539 4.17112 4.30161 4.34070 4.51402 4.53262 4.64096 4.70434 4.86588 4.96335 5.03539 5.17020 5.23157 5.37915 5.42668 5.60635 5.67535 5.76051 6.07188 6.11868 6.18355 6.28193 6.76529 7.33339 8.86873 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.009368 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.691584 B = 2988.200004 C = 3469.422603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.046 0.954 9 C 0.059 3.941 10 C -0.071 4.071 11 C -0.144 4.144 12 C -0.119 4.119 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.106 4.106 17 C 0.067 3.933 18 O -0.394 6.394 19 C 0.104 3.896 20 H 0.266 0.734 21 H -0.003 1.003 22 H 0.012 0.988 23 H 0.111 0.889 24 H 0.149 0.851 25 H 0.157 0.843 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 -11.670 3.697 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.064 0.936 9 C 0.023 3.977 10 C -0.071 4.071 11 C -0.162 4.162 12 C -0.137 4.137 13 C -0.147 4.147 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.143 4.143 17 C -0.010 4.010 18 O -0.313 6.313 19 C 0.028 3.972 20 H 0.074 0.926 21 H 0.015 0.985 22 H 0.030 0.970 23 H 0.129 0.871 24 H 0.167 0.833 25 H 0.175 0.825 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.331 -11.491 3.825 14.157 hybrid contribution -0.429 1.310 -0.601 1.503 sum 6.902 -10.181 3.225 12.716 Atomic orbital electron populations 1.70063 1.07468 1.27872 1.51332 1.25840 0.95731 1.02773 0.94686 0.85523 0.78648 0.78845 0.78545 1.19773 1.20224 1.19332 1.21218 0.92585 0.91187 1.50785 0.93580 1.18095 0.92827 0.91019 0.95787 1.20418 0.97540 0.95612 0.93502 1.21163 1.00059 0.97881 0.97095 1.21321 0.96648 0.96288 0.99404 1.21188 1.01365 1.01245 0.90901 1.20549 0.98045 0.96852 0.97851 1.19609 0.98338 0.96989 0.94748 1.21065 1.01429 0.98939 0.92909 1.22705 0.82895 0.97673 0.97705 1.87990 1.27965 1.62993 1.52312 1.21610 1.02201 0.91231 0.82126 0.92558 0.98467 0.96988 0.87084 0.83341 0.82498 0.90998 0.92060 0.91387 0.86881 0.85866 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.52 -30.20 9.05 25.60 0.23 -29.96 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.06 3.24 4.57 29.11 0.13 3.37 16 10 C -0.07 -3.25 5.07 -19.82 -0.10 -3.35 16 11 C -0.14 -5.78 9.67 22.23 0.22 -5.56 16 12 C -0.12 -3.70 10.05 22.23 0.22 -3.48 16 13 C -0.13 -3.66 9.67 22.32 0.22 -3.44 16 14 C -0.13 -4.34 5.80 -19.86 -0.12 -4.45 16 15 C -0.10 -3.94 5.79 -19.70 -0.11 -4.06 16 16 C -0.11 -4.15 5.31 30.00 0.16 -3.99 16 17 C 0.07 1.97 6.83 71.97 0.49 2.46 16 18 O -0.39 -12.02 10.80 -148.98 -1.61 -13.63 16 19 C 0.10 2.66 6.66 71.22 0.47 3.14 16 20 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 21 H 0.00 -0.18 8.05 -2.39 -0.02 -0.19 16 22 H 0.01 0.69 6.28 -2.39 -0.01 0.67 16 23 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 24 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 26 H 0.07 2.98 6.50 -2.39 -0.02 2.97 16 27 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.07 1.76 8.07 -2.39 -0.02 1.74 16 29 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.22 260.56 4.09 -63.13 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.11 Total: 7.60 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 2.28 Total: -48.41 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.74 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.61 Total: -13.63 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.22 4.09 -63.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.262 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds