Wall clock time and date at job start Mon Mar 30 2020 02:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38285 * 120.02097 * 89.99803 * 10 9 7 12 12 C 1.38102 * 119.97978 * 180.02562 * 11 10 9 13 13 C 1.38505 * 120.31744 * 359.94573 * 12 11 10 14 14 C 1.38368 * 119.83554 * 359.93030 * 13 12 11 15 15 C 1.37975 * 120.01730 * 269.71942 * 10 9 7 16 16 O 1.35840 * 121.80749 * 180.32005 * 14 13 12 17 17 C 1.42830 * 117.85766 * 342.78551 * 16 14 13 18 18 C 1.53397 * 108.37721 * 49.18566 * 17 16 14 19 19 C 1.50776 * 118.75785 * 179.78158 * 13 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 120.01111 * 0.03646 * 11 10 9 24 24 H 1.08001 * 119.84000 * 179.91520 * 12 11 10 25 25 H 1.07999 * 119.89422 * 0.03173 * 15 10 9 26 26 H 1.08997 * 109.67915 * 289.46028 * 17 16 14 27 27 H 1.08997 * 109.71163 * 168.92655 * 17 16 14 28 28 H 1.09006 * 109.69990 * 175.58601 * 18 17 16 29 29 H 1.08996 * 109.73483 * 55.00682 * 18 17 16 30 30 H 1.09004 * 109.43366 * 282.40855 * 19 13 12 31 31 H 1.08993 * 109.43714 * 42.32305 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2494 -3.2696 -1.1844 12 6 4.7091 -4.5719 -1.1789 13 6 4.9375 -5.2277 0.0195 14 6 4.7051 -4.5743 1.2169 15 6 4.2444 -3.2614 1.2076 16 8 4.9215 -5.1768 2.4150 17 6 5.0334 -6.6006 2.4356 18 6 6.0269 -7.0233 1.3459 19 6 5.4346 -6.6507 -0.0155 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.0740 -2.7627 -2.1217 24 1 4.8910 -5.0815 -2.1135 25 1 4.0638 -2.7477 2.1403 26 1 4.0594 -7.0482 2.2381 27 1 5.3966 -6.9268 3.4101 28 1 6.1885 -8.1003 1.3938 29 1 6.9739 -6.5031 1.4894 30 1 4.6049 -7.3192 -0.2454 31 1 6.2021 -6.7479 -0.7832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261296855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:57 Heat of formation + Delta-G solvation = -31.976683 kcal Electronic energy + Delta-G solvation = -14132.328329 eV Core-core repulsion = 11764.044334 eV Total energy + Delta-G solvation = -2368.283995 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24781 -37.31642 -34.29948 -33.01284 -31.19312 -29.71886 -27.99586 -25.21373 -23.49339 -22.26525 -21.20595 -19.40446 -16.79893 -16.70070 -16.28644 -15.70038 -14.56792 -14.26733 -14.12751 -13.63074 -13.53510 -12.91328 -12.78545 -12.55624 -12.05253 -11.65721 -11.29011 -11.09470 -10.88206 -10.71829 -10.47573 -10.31669 -9.94053 -9.78476 -9.35621 -8.57126 -7.96976 -7.54751 -6.06147 -4.05281 1.94800 2.01701 3.29944 3.37695 3.41024 3.60231 4.34089 4.42808 4.72453 4.80718 4.89803 5.18166 5.26348 5.33162 5.51564 5.56209 5.65588 5.76078 5.85575 6.02793 6.11405 6.13770 6.31901 6.58816 6.82340 6.95162 7.01218 7.02420 7.37712 7.59952 7.69718 7.91453 8.50644 8.99217 9.53821 11.06837 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.051340 B = 0.006791 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.251908 B = 4121.849894 C = 4283.746045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.014 3.986 10 C 0.002 3.998 11 C -0.150 4.150 12 C -0.089 4.089 13 C -0.190 4.190 14 C 0.126 3.874 15 C -0.149 4.149 16 O -0.320 6.320 17 C 0.062 3.938 18 C -0.158 4.158 19 C -0.070 4.070 20 H 0.264 0.736 21 H 0.026 0.974 22 H 0.030 0.970 23 H 0.121 0.879 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.820 -12.007 1.106 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.023 4.023 10 C 0.002 3.998 11 C -0.168 4.168 12 C -0.107 4.107 13 C -0.190 4.190 14 C 0.081 3.919 15 C -0.168 4.168 16 O -0.234 6.234 17 C -0.014 4.014 18 C -0.196 4.196 19 C -0.107 4.107 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.139 0.861 24 H 0.133 0.867 25 H 0.144 0.856 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.677 -11.804 1.295 16.654 hybrid contribution 0.231 0.653 -0.201 0.721 sum 11.908 -11.151 1.094 16.351 Atomic orbital electron populations 1.69900 1.06259 1.26969 1.50710 1.24995 0.94747 0.99013 0.94479 0.86803 0.80446 0.83633 0.78639 1.20139 1.21228 1.18874 1.20918 0.88151 0.94725 1.51255 0.90787 1.18834 0.97545 0.88393 0.97544 1.20053 0.90809 0.97601 0.91333 1.20960 1.02715 0.94773 0.98330 1.20750 0.99030 0.94711 0.96188 1.19536 1.09432 0.97170 0.92894 1.18649 0.96960 0.92649 0.83592 1.20497 1.04123 0.92892 0.99242 1.85976 1.87668 1.21118 1.28660 1.22859 0.99041 0.79592 0.99879 1.22213 0.99677 1.01910 0.95785 1.20357 1.00117 0.93144 0.97121 0.92598 0.95559 0.95216 0.86109 0.86721 0.85580 0.92144 0.88117 0.90352 0.90700 0.91172 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.77 9.65 -34.44 -0.33 -15.10 16 8 H 0.07 2.34 7.98 -52.49 -0.42 1.92 16 9 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 10 C 0.00 0.05 5.06 -104.70 -0.53 -0.48 16 11 C -0.15 -2.92 9.70 -39.61 -0.38 -3.30 16 12 C -0.09 -1.49 9.67 -39.53 -0.38 -1.88 16 13 C -0.19 -3.14 5.75 -104.44 -0.60 -3.74 16 14 C 0.13 2.34 6.47 -39.20 -0.25 2.08 16 15 C -0.15 -3.11 9.59 -39.34 -0.38 -3.48 16 16 O -0.32 -5.39 10.27 -19.24 -0.20 -5.59 16 17 C 0.06 0.74 7.03 37.36 0.26 1.00 16 18 C -0.16 -1.68 6.19 -26.49 -0.16 -1.84 16 19 C -0.07 -0.86 5.86 -27.81 -0.16 -1.02 16 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.03 0.62 7.52 -51.93 -0.39 0.23 16 22 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 23 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 24 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 25 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 261.03 15.07 3.93 3.93 Total: -1.00 -31.54 261.03 -7.46 -39.00 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.15 Total: -1.56 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -3.14 Total: -25.62 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.77 Total: -27.02 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.54 -7.46 -39.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.018 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds