Wall clock time and date at job start Mon Mar 30 2020 02:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38285 * 120.02097 * 89.99803 * 10 9 7 12 12 C 1.38102 * 119.97978 * 180.02562 * 11 10 9 13 13 C 1.38505 * 120.31744 * 359.94573 * 12 11 10 14 14 C 1.38368 * 119.83554 * 359.93030 * 13 12 11 15 15 C 1.37975 * 120.01730 * 269.71942 * 10 9 7 16 16 O 1.35840 * 121.80749 * 180.32005 * 14 13 12 17 17 C 1.42830 * 117.85766 * 342.78551 * 16 14 13 18 18 C 1.53397 * 108.37721 * 49.18566 * 17 16 14 19 19 C 1.50776 * 118.75785 * 179.78158 * 13 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 120.01111 * 0.03646 * 11 10 9 24 24 H 1.08001 * 119.84000 * 179.91520 * 12 11 10 25 25 H 1.07999 * 119.89422 * 0.03173 * 15 10 9 26 26 H 1.08997 * 109.67915 * 289.46028 * 17 16 14 27 27 H 1.08997 * 109.71163 * 168.92655 * 17 16 14 28 28 H 1.09006 * 109.69990 * 175.58601 * 18 17 16 29 29 H 1.08996 * 109.73483 * 55.00682 * 18 17 16 30 30 H 1.09004 * 109.43366 * 282.40855 * 19 13 12 31 31 H 1.08993 * 109.43714 * 42.32305 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2494 -3.2696 -1.1844 12 6 4.7091 -4.5719 -1.1789 13 6 4.9375 -5.2277 0.0195 14 6 4.7051 -4.5743 1.2169 15 6 4.2444 -3.2614 1.2076 16 8 4.9215 -5.1768 2.4150 17 6 5.0334 -6.6006 2.4356 18 6 6.0269 -7.0233 1.3459 19 6 5.4346 -6.6507 -0.0155 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.0740 -2.7627 -2.1217 24 1 4.8910 -5.0815 -2.1135 25 1 4.0638 -2.7477 2.1403 26 1 4.0594 -7.0482 2.2381 27 1 5.3966 -6.9268 3.4101 28 1 6.1885 -8.1003 1.3938 29 1 6.9739 -6.5031 1.4894 30 1 4.6049 -7.3192 -0.2454 31 1 6.2021 -6.7479 -0.7832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261296855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:57 Heat of formation + Delta-G solvation = -51.252346 kcal Electronic energy + Delta-G solvation = -14133.164184 eV Core-core repulsion = 11764.044334 eV Total energy + Delta-G solvation = -2369.119850 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51840 -38.71775 -35.66858 -34.82390 -32.87547 -31.11150 -29.64961 -26.51392 -24.97746 -23.77008 -22.74512 -20.60650 -18.99356 -18.13171 -17.53858 -16.91503 -16.29204 -15.85140 -15.29590 -15.02232 -14.85173 -14.50899 -14.08498 -13.96666 -13.72329 -13.44966 -12.74286 -12.46394 -12.43157 -12.14941 -11.83277 -11.77086 -11.54750 -11.48895 -11.21036 -10.80327 -9.47530 -8.96479 -8.31591 -6.37188 0.48799 0.56198 1.35635 1.38030 1.50224 2.34534 2.41443 2.89695 3.02579 3.78522 3.83253 3.90993 4.03581 4.26825 4.37038 4.43900 4.56418 4.63275 4.72493 4.77173 4.93861 4.97238 5.01835 5.17782 5.22846 5.26690 5.40363 5.54576 5.59157 5.90660 5.98739 6.24852 6.59915 6.68714 7.26069 8.85133 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.051340 B = 0.006791 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.251908 B = 4121.849894 C = 4283.746045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.522 4.522 8 H 0.025 0.975 9 C 0.021 3.979 10 C -0.031 4.031 11 C -0.165 4.165 12 C -0.082 4.082 13 C -0.183 4.183 14 C 0.120 3.880 15 C -0.175 4.175 16 O -0.339 6.339 17 C 0.047 3.953 18 C -0.152 4.152 19 C -0.072 4.072 20 H 0.269 0.731 21 H 0.037 0.963 22 H 0.028 0.972 23 H 0.125 0.875 24 H 0.154 0.846 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -13.489 0.552 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.560 4.560 8 H 0.044 0.956 9 C -0.016 4.016 10 C -0.031 4.031 11 C -0.183 4.183 12 C -0.099 4.099 13 C -0.184 4.184 14 C 0.075 3.925 15 C -0.194 4.194 16 O -0.254 6.254 17 C -0.027 4.027 18 C -0.189 4.189 19 C -0.109 4.109 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.143 0.857 24 H 0.171 0.829 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.034 -13.312 0.745 19.358 hybrid contribution -0.523 0.910 0.023 1.050 sum 13.510 -12.403 0.768 18.356 Atomic orbital electron populations 1.70057 1.08312 1.28361 1.52148 1.26000 0.95656 1.03442 0.93802 0.85622 0.79385 0.77906 0.79574 1.18523 1.20662 1.17182 1.21124 0.90682 0.93054 1.51127 0.95610 1.18669 0.94449 0.90830 0.97681 1.19915 0.93433 0.96863 0.92900 1.21115 1.03469 0.96262 0.97503 1.21162 0.97169 0.93539 0.98057 1.20108 1.07217 0.99347 0.91737 1.18705 0.96528 0.92070 0.85196 1.20493 1.05930 0.94608 0.98373 1.85948 1.87385 1.24076 1.28028 1.23315 1.00106 0.76896 1.02403 1.22221 0.98584 1.04189 0.93892 1.20533 1.01362 0.90000 0.99026 0.92257 0.94511 0.95363 0.85707 0.82855 0.87158 0.91851 0.85251 0.86571 0.91017 0.89640 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 2 C 0.01 0.48 5.47 84.66 0.46 0.94 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.52 -31.48 9.65 25.60 0.25 -31.24 16 8 H 0.03 1.74 7.98 -2.91 -0.02 1.71 16 9 C 0.02 1.05 4.17 29.10 0.12 1.17 16 10 C -0.03 -1.40 5.06 -19.92 -0.10 -1.50 16 11 C -0.17 -6.44 9.70 22.25 0.22 -6.22 16 12 C -0.08 -2.57 9.67 22.30 0.22 -2.35 16 13 C -0.18 -5.66 5.75 -19.75 -0.11 -5.77 16 14 C 0.12 4.42 6.47 22.52 0.15 4.56 16 15 C -0.18 -7.60 9.59 22.43 0.22 -7.39 16 16 O -0.34 -11.18 10.27 -91.76 -0.94 -12.12 16 17 C 0.05 1.00 7.03 72.12 0.51 1.51 16 18 C -0.15 -2.56 6.19 30.75 0.19 -2.37 16 19 C -0.07 -1.46 5.86 29.90 0.18 -1.29 16 20 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 21 H 0.04 1.73 7.52 -2.38 -0.02 1.72 16 22 H 0.03 1.39 7.13 -2.39 -0.02 1.38 16 23 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 24 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 25 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.94 261.03 4.57 -67.37 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.05 Total: 8.32 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 2.28 Total: -49.95 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.30 Total: -60.36 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.94 Total: -12.12 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -71.94 4.57 -67.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.115 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds