Wall clock time and date at job start Mon Mar 30 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38144 * 119.84315 * 2 1 4 4 C 1.38249 * 119.98358 * 179.97438 * 3 2 1 5 5 C 1.38014 * 119.95727 * 0.07851 * 4 3 2 6 6 C 1.39103 * 120.21651 * 359.97438 * 5 4 3 7 7 C 1.38414 * 119.69313 * 359.87107 * 6 5 4 8 8 C 1.50773 * 121.40356 * 180.24130 * 7 6 5 9 9 H 1.08997 * 109.40504 * 102.33736 * 8 7 6 10 10 C 1.50702 * 109.43280 * 222.23323 * 8 7 6 11 11 H 1.08002 * 120.00185 * 30.85180 * 10 8 7 12 12 C 1.37882 * 119.99605 * 210.85000 * 10 8 7 13 13 N 1.31513 * 120.00235 * 352.76628 * 12 10 8 14 14 Si 1.86798 * 119.99631 * 172.75998 * 12 10 8 15 15 H 1.48502 * 109.47242 * 60.00475 * 14 12 10 16 16 H 1.48493 * 109.47714 * 300.00136 * 14 12 10 17 17 H 1.48502 * 109.46834 * 179.97438 * 14 12 10 18 18 C 1.53068 * 109.67452 * 342.29591 * 8 7 6 19 19 C 1.53407 * 108.29676 * 48.19574 * 18 8 7 20 20 O 1.35844 * 118.49949 * 179.81786 * 6 5 4 21 21 H 1.08997 * 109.47522 * 95.43800 * 1 2 3 22 22 H 1.09007 * 109.46980 * 215.43021 * 1 2 3 23 23 H 1.08993 * 109.47214 * 335.43085 * 1 2 3 24 24 H 1.08001 * 120.00863 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.02053 * 180.09982 * 4 3 2 26 26 H 1.08001 * 119.88642 * 179.97438 * 5 4 3 27 27 H 0.97011 * 119.99915 * 4.22449 * 13 12 10 28 28 H 1.09002 * 109.69809 * 167.90169 * 18 8 7 29 29 H 1.09000 * 109.70116 * 288.49171 * 18 8 7 30 30 H 1.08999 * 109.68144 * 54.96094 * 19 18 8 31 31 H 1.08999 * 109.68400 * 175.48357 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1982 0.0000 4 6 3.5769 1.2016 0.0005 5 6 4.2690 0.0076 -0.0006 6 6 3.5801 -1.2009 -0.0017 7 6 2.1960 -1.2011 0.0010 8 6 1.4105 -2.4880 0.0054 9 1 1.0363 -2.6805 1.0108 10 6 0.2493 -2.3699 -0.9479 11 1 0.3329 -1.7473 -1.8264 12 6 -0.9200 -3.0568 -0.6984 13 7 -0.9756 -3.9234 0.2892 14 14 -2.4250 -2.7562 -1.7631 15 1 -2.1073 -3.0897 -3.1749 16 1 -2.8209 -1.3281 -1.6690 17 1 -3.5433 -3.6124 -1.2924 18 6 2.3132 -3.6442 -0.4322 19 6 3.6230 -3.5598 0.3620 20 8 4.2963 -2.3552 -0.0065 21 1 -0.3634 -0.0974 -1.0230 22 1 -0.3633 -0.8374 0.5958 23 1 -0.3633 0.9345 0.4273 24 1 1.6520 2.1322 -0.0004 25 1 4.1149 2.1380 0.0022 26 1 5.3490 0.0116 -0.0006 27 1 -0.2144 -4.0349 0.8802 28 1 1.8194 -4.5939 -0.2267 29 1 2.5242 -3.5624 -1.4985 30 1 3.4045 -3.5463 1.4298 31 1 4.2511 -4.4189 0.1266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301966.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:29 Heat of formation + Delta-G solvation = -29.247905 kcal Electronic energy + Delta-G solvation = -14972.410118 eV Core-core repulsion = 12604.244452 eV Total energy + Delta-G solvation = -2368.165666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01696 -37.03294 -34.98812 -31.72410 -30.85927 -29.89353 -26.26561 -25.68321 -23.28951 -22.51352 -20.49736 -19.19732 -17.06917 -16.65874 -15.70610 -15.38581 -14.28186 -13.95202 -13.73075 -13.41126 -13.01886 -12.72094 -12.21213 -11.86192 -11.70788 -11.31955 -11.05419 -10.91143 -10.60440 -10.53861 -10.22467 -10.13385 -9.95629 -9.40697 -8.84505 -8.32223 -7.71794 -7.43056 -6.44972 -4.09557 2.06317 2.10745 3.38015 3.39007 3.57353 3.94891 4.39468 4.50462 5.20560 5.47928 5.54746 5.63863 5.73076 5.76142 5.89251 5.97127 6.05467 6.21966 6.41764 6.54005 6.69423 6.72185 6.77912 6.93853 7.02963 7.10706 7.23256 7.30710 7.54205 7.68345 8.05855 8.15149 8.34705 8.75814 9.52661 10.92884 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031013 B = 0.012291 C = 0.009368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.641548 B = 2277.516443 C = 2988.231091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.030 4.030 3 C -0.168 4.168 4 C -0.105 4.105 5 C -0.170 4.170 6 C 0.116 3.884 7 C -0.121 4.121 8 C 0.064 3.936 9 H 0.047 0.953 10 C -0.575 4.575 11 H 0.053 0.947 12 C 0.022 3.978 13 N -0.909 5.909 14 Si 1.059 2.941 15 H -0.288 1.288 16 H -0.284 1.284 17 H -0.282 1.282 18 C -0.146 4.146 19 C 0.056 3.944 20 O -0.327 6.327 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.030 0.970 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.269 0.731 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 5.294 0.270 7.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C -0.187 4.187 4 C -0.124 4.124 5 C -0.189 4.189 6 C 0.071 3.929 7 C -0.121 4.121 8 C 0.046 3.954 9 H 0.065 0.935 10 C -0.613 4.613 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.545 5.545 14 Si 0.887 3.113 15 H -0.214 1.214 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.184 4.184 19 C -0.019 4.019 20 O -0.241 6.241 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.049 0.951 24 H 0.131 0.869 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.159 4.757 -0.028 6.319 hybrid contribution 1.529 0.373 0.208 1.587 sum 5.688 5.130 0.180 7.662 Atomic orbital electron populations 1.20929 0.90468 1.00179 1.03359 1.19776 0.96815 0.91299 0.95171 1.20878 0.94013 0.97355 1.06425 1.20643 0.94150 0.96496 1.01071 1.20360 0.99271 0.90289 1.08963 1.18827 0.90274 0.85602 0.98148 1.20445 0.91409 0.98020 1.02276 1.17943 0.92846 0.86456 0.98186 0.93504 1.21706 0.97963 1.32114 1.09552 0.92825 1.25743 1.00764 0.92871 0.98845 1.70833 1.35435 1.31098 1.17149 0.83665 0.75864 0.76401 0.75333 1.21439 1.21000 1.20777 1.22453 0.94288 1.01939 0.99762 1.23059 0.95633 0.84433 0.98733 1.85855 1.39370 1.14583 1.84320 0.90576 0.89635 0.95124 0.86940 0.86641 0.86581 0.91939 0.91114 0.91834 0.92907 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 8.11 36.01 0.29 -1.65 16 2 C -0.03 -0.65 5.73 -104.57 -0.60 -1.24 16 3 C -0.17 -3.08 9.67 -39.61 -0.38 -3.46 16 4 C -0.11 -1.80 10.04 -39.66 -0.40 -2.20 16 5 C -0.17 -3.16 9.94 -39.34 -0.39 -3.55 16 6 C 0.12 2.47 6.47 -39.20 -0.25 2.21 16 7 C -0.12 -2.73 5.43 -104.44 -0.57 -3.30 16 8 C 0.06 1.54 1.44 -92.85 -0.13 1.41 16 9 H 0.05 1.22 6.71 -51.93 -0.35 0.87 16 10 C -0.58 -14.84 4.57 -34.44 -0.16 -15.00 16 11 H 0.05 1.43 6.94 -52.49 -0.36 1.06 16 12 C 0.02 0.58 5.08 -17.82 -0.09 0.49 16 13 N -0.91 -25.56 13.62 55.43 0.76 -24.81 16 14 Si 1.06 23.85 29.91 -169.99 -5.08 18.76 16 15 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.15 -3.21 5.49 -26.49 -0.15 -3.36 16 19 C 0.06 1.06 7.03 37.37 0.26 1.32 16 20 O -0.33 -6.71 10.27 -19.25 -0.20 -6.91 16 21 H 0.08 1.64 6.72 -51.93 -0.35 1.29 16 22 H 0.08 2.00 6.11 -51.93 -0.32 1.68 16 23 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 24 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 25 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 26 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.27 7.50 6.63 -40.82 -0.27 7.23 16 28 H 0.07 1.58 8.07 -51.93 -0.42 1.16 16 29 H 0.06 1.45 8.10 -51.93 -0.42 1.03 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 251.88 15.07 3.80 3.80 Total: -1.00 -28.02 251.88 -7.11 -35.13 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.82 Total: 2.35 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.56 Total: -28.32 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.76 Total: -24.81 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.20 Total: -6.91 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.08 Total: 18.76 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.02 -7.11 -35.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301966.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.881 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds