Wall clock time and date at job start Mon Mar 30 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38144 * 119.84315 * 2 1 4 4 C 1.38249 * 119.98358 * 179.97438 * 3 2 1 5 5 C 1.38014 * 119.95727 * 0.07851 * 4 3 2 6 6 C 1.39103 * 120.21651 * 359.97438 * 5 4 3 7 7 C 1.38414 * 119.69313 * 359.87107 * 6 5 4 8 8 C 1.50773 * 121.40356 * 180.24130 * 7 6 5 9 9 H 1.08997 * 109.40504 * 102.33736 * 8 7 6 10 10 C 1.50702 * 109.43280 * 222.23323 * 8 7 6 11 11 H 1.08002 * 120.00185 * 30.85180 * 10 8 7 12 12 C 1.37882 * 119.99605 * 210.85000 * 10 8 7 13 13 N 1.31513 * 120.00235 * 352.76628 * 12 10 8 14 14 Si 1.86798 * 119.99631 * 172.75998 * 12 10 8 15 15 H 1.48502 * 109.47242 * 60.00475 * 14 12 10 16 16 H 1.48493 * 109.47714 * 300.00136 * 14 12 10 17 17 H 1.48502 * 109.46834 * 179.97438 * 14 12 10 18 18 C 1.53068 * 109.67452 * 342.29591 * 8 7 6 19 19 C 1.53407 * 108.29676 * 48.19574 * 18 8 7 20 20 O 1.35844 * 118.49949 * 179.81786 * 6 5 4 21 21 H 1.08997 * 109.47522 * 95.43800 * 1 2 3 22 22 H 1.09007 * 109.46980 * 215.43021 * 1 2 3 23 23 H 1.08993 * 109.47214 * 335.43085 * 1 2 3 24 24 H 1.08001 * 120.00863 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.02053 * 180.09982 * 4 3 2 26 26 H 1.08001 * 119.88642 * 179.97438 * 5 4 3 27 27 H 0.97011 * 119.99915 * 4.22449 * 13 12 10 28 28 H 1.09002 * 109.69809 * 167.90169 * 18 8 7 29 29 H 1.09000 * 109.70116 * 288.49171 * 18 8 7 30 30 H 1.08999 * 109.68144 * 54.96094 * 19 18 8 31 31 H 1.08999 * 109.68400 * 175.48357 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1982 0.0000 4 6 3.5769 1.2016 0.0005 5 6 4.2690 0.0076 -0.0006 6 6 3.5801 -1.2009 -0.0017 7 6 2.1960 -1.2011 0.0010 8 6 1.4105 -2.4880 0.0054 9 1 1.0363 -2.6805 1.0108 10 6 0.2493 -2.3699 -0.9479 11 1 0.3329 -1.7473 -1.8264 12 6 -0.9200 -3.0568 -0.6984 13 7 -0.9756 -3.9234 0.2892 14 14 -2.4250 -2.7562 -1.7631 15 1 -2.1073 -3.0897 -3.1749 16 1 -2.8209 -1.3281 -1.6690 17 1 -3.5433 -3.6124 -1.2924 18 6 2.3132 -3.6442 -0.4322 19 6 3.6230 -3.5598 0.3620 20 8 4.2963 -2.3552 -0.0065 21 1 -0.3634 -0.0974 -1.0230 22 1 -0.3633 -0.8374 0.5958 23 1 -0.3633 0.9345 0.4273 24 1 1.6520 2.1322 -0.0004 25 1 4.1149 2.1380 0.0022 26 1 5.3490 0.0116 -0.0006 27 1 -0.2144 -4.0349 0.8802 28 1 1.8194 -4.5939 -0.2267 29 1 2.5242 -3.5624 -1.4985 30 1 3.4045 -3.5463 1.4298 31 1 4.2511 -4.4189 0.1266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301966.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:29 Heat of formation + Delta-G solvation = -44.550043 kcal Electronic energy + Delta-G solvation = -14973.073668 eV Core-core repulsion = 12604.244452 eV Total energy + Delta-G solvation = -2368.829217 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60208 -38.56152 -36.79578 -33.55764 -32.52573 -31.43509 -28.02695 -27.34336 -25.03038 -24.25589 -22.05966 -20.86082 -18.97996 -18.22769 -17.32592 -16.96725 -15.85846 -15.68831 -15.58220 -14.98487 -14.63957 -14.31208 -13.89649 -13.51806 -13.32289 -13.09935 -12.77889 -12.58477 -12.31434 -12.17758 -11.96890 -11.82757 -11.58954 -11.17043 -10.74487 -10.31293 -9.33425 -8.99019 -8.55201 -6.19575 0.54344 0.59086 1.53532 1.58631 1.77538 2.43429 2.56684 2.93180 3.19995 3.96485 4.05400 4.07066 4.11643 4.28555 4.36977 4.47563 4.56043 4.61326 4.84242 4.89091 4.95925 5.05328 5.12599 5.23635 5.38829 5.50526 5.58640 5.63770 5.94501 6.05593 6.13927 6.22758 6.54415 6.67785 7.48382 8.82148 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031013 B = 0.012291 C = 0.009368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.641548 B = 2277.516443 C = 2988.231091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.055 4.055 3 C -0.164 4.164 4 C -0.090 4.090 5 C -0.170 4.170 6 C 0.094 3.906 7 C -0.156 4.156 8 C 0.062 3.938 9 H 0.016 0.984 10 C -0.567 4.567 11 H 0.041 0.959 12 C -0.021 4.021 13 N -0.938 5.938 14 Si 1.096 2.904 15 H -0.277 1.277 16 H -0.263 1.263 17 H -0.288 1.288 18 C -0.140 4.140 19 C 0.063 3.937 20 O -0.330 6.330 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.144 0.856 25 H 0.163 0.837 26 H 0.143 0.857 27 H 0.258 0.742 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 7.473 -0.178 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.108 4.108 5 C -0.188 4.188 6 C 0.050 3.950 7 C -0.157 4.157 8 C 0.044 3.956 9 H 0.034 0.966 10 C -0.605 4.605 11 H 0.059 0.941 12 C -0.219 4.219 13 N -0.576 5.576 14 Si 0.919 3.081 15 H -0.203 1.203 16 H -0.188 1.188 17 H -0.213 1.213 18 C -0.179 4.179 19 C -0.012 4.012 20 O -0.245 6.245 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.162 0.838 25 H 0.180 0.820 26 H 0.160 0.840 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.518 6.952 -0.479 8.889 hybrid contribution 1.193 -0.213 0.364 1.265 sum 6.711 6.739 -0.115 9.511 Atomic orbital electron populations 1.20745 0.90987 1.00301 1.02073 1.19970 0.96834 0.92237 0.96511 1.21235 0.94959 0.97228 1.04798 1.21177 0.93738 0.97795 0.98048 1.20788 1.00735 0.89664 1.07621 1.19155 0.89948 0.86817 0.99088 1.20411 0.92435 0.97653 1.05210 1.17829 0.93147 0.88600 0.96036 0.96614 1.21799 0.98780 1.30852 1.09028 0.94058 1.26869 1.03343 0.92430 0.99248 1.70934 1.35186 1.33032 1.18424 0.83198 0.73085 0.77337 0.74461 1.20306 1.18807 1.21341 1.22265 0.95863 1.00441 0.99307 1.23107 0.94472 0.85305 0.98283 1.85844 1.39335 1.14780 1.84525 0.91852 0.93153 0.92007 0.83827 0.81991 0.83958 0.93155 0.92379 0.93232 0.92583 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.54 8.11 71.24 0.58 -2.96 16 2 C -0.06 -2.30 5.73 -19.83 -0.11 -2.42 16 3 C -0.16 -5.44 9.67 22.25 0.22 -5.22 16 4 C -0.09 -2.64 10.04 22.22 0.22 -2.42 16 5 C -0.17 -5.72 9.94 22.42 0.22 -5.50 16 6 C 0.09 3.90 6.47 22.52 0.15 4.05 16 7 C -0.16 -7.12 5.43 -19.74 -0.11 -7.23 16 8 C 0.06 3.13 1.44 -12.24 -0.02 3.11 16 9 H 0.02 0.88 6.71 -2.39 -0.02 0.87 16 10 C -0.57 -30.26 4.57 25.60 0.12 -30.14 16 11 H 0.04 2.26 6.94 -2.91 -0.02 2.24 16 12 C -0.02 -1.12 5.08 84.66 0.43 -0.69 16 13 N -0.94 -54.92 13.62 21.45 0.29 -54.63 16 14 Si 1.10 48.68 29.91 68.60 2.05 50.73 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 18 C -0.14 -6.36 5.49 30.75 0.17 -6.19 16 19 C 0.06 2.34 7.03 72.12 0.51 2.85 16 20 O -0.33 -13.16 10.27 -91.80 -0.94 -14.10 16 21 H 0.06 2.74 6.72 -2.39 -0.02 2.73 16 22 H 0.05 2.43 6.11 -2.38 -0.01 2.41 16 23 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 24 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 25 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 26 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 27 H 0.26 15.23 6.63 -92.70 -0.61 14.61 16 28 H 0.06 2.71 8.07 -2.39 -0.02 2.69 16 29 H 0.05 2.33 8.10 -2.39 -0.02 2.31 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 Total: -1.00 -62.31 251.88 5.04 -57.27 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.27 Total: 13.50 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 2.37 Total: -52.77 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.29 Total: -54.63 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.94 Total: -14.10 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.73 kcal Total: -62.31 5.04 -57.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301966.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.719 kcal (2) G-P(sol) polarization free energy of solvation -62.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds