Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.87342 * 58.99115 * 9 7 2 11 11 C 1.54103 * 109.87856 * 179.97438 * 9 7 2 12 12 C 1.54810 * 104.18980 * 121.45150 * 11 9 7 13 13 C 1.55001 * 102.09029 * 20.87723 * 12 11 9 14 14 H 1.09004 * 110.61504 * 81.48433 * 13 12 11 15 15 C 1.50699 * 110.61842 * 204.31641 * 13 12 11 16 16 C 1.38239 * 120.00003 * 84.73142 * 15 13 12 17 17 C 1.38227 * 120.00031 * 179.76877 * 16 15 13 18 18 C 1.38240 * 120.00350 * 0.47768 * 17 16 15 19 19 C 1.38231 * 119.99601 * 359.80092 * 18 17 16 20 20 C 1.38235 * 120.00225 * 265.00379 * 15 13 12 21 21 O 1.43746 * 109.87780 * 297.82641 * 9 7 2 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.08998 * 110.49036 * 240.12542 * 11 9 7 24 24 H 1.08998 * 110.48784 * 2.77513 * 11 9 7 25 25 H 1.09000 * 110.90948 * 139.07854 * 12 11 9 26 26 H 1.09005 * 110.90659 * 262.68257 * 12 11 9 27 27 H 1.08005 * 119.99501 * 359.97438 * 16 15 13 28 28 H 1.08008 * 120.00182 * 180.25394 * 17 16 15 29 29 H 1.07991 * 120.00332 * 179.76782 * 18 17 16 30 30 H 1.07997 * 120.00027 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.00221 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6088 -2.5562 -0.8783 11 6 2.2442 -3.6775 0.0005 12 6 1.8899 -4.4723 1.2809 13 6 0.4401 -4.0029 1.5637 14 1 -0.2690 -4.5527 0.9448 15 6 0.1048 -4.1657 3.0239 16 6 0.4506 -3.1778 3.9268 17 6 0.1389 -3.3250 5.2654 18 6 -0.5099 -4.4646 5.7028 19 6 -0.8505 -5.4551 4.8009 20 6 -0.5434 -5.3056 3.4613 21 8 0.4598 -2.6067 1.1958 22 1 -0.4850 -0.8401 -0.0004 23 1 2.1012 -4.2970 -0.8848 24 1 3.2699 -3.3120 0.0500 25 1 1.9218 -5.5457 1.0937 26 1 2.5535 -4.2022 2.1025 27 1 0.9614 -2.2894 3.5858 28 1 0.4054 -2.5512 5.9703 29 1 -0.7501 -4.5813 6.7492 30 1 -1.3570 -6.3457 5.1426 31 1 -0.8094 -6.0797 2.7567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306310366.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = -33.918133 kcal Electronic energy + Delta-G solvation = -14441.687232 eV Core-core repulsion = 12073.319049 eV Total energy + Delta-G solvation = -2368.368182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.28927 -37.69441 -32.98203 -31.35618 -30.93596 -30.51881 -27.46568 -24.28479 -22.42425 -22.09797 -20.39199 -20.12869 -17.25258 -16.39585 -15.66045 -14.95703 -14.55161 -13.86487 -13.70739 -13.50484 -13.09390 -12.89756 -12.59603 -12.36521 -11.58410 -11.37004 -10.84459 -10.77789 -10.55786 -10.40792 -10.26689 -10.05165 -9.91549 -9.03696 -8.60435 -8.48147 -8.34259 -8.03362 -6.34275 -4.12651 1.64601 1.73437 3.44392 3.46710 3.65381 4.08455 4.53920 4.81168 5.16353 5.24744 5.27817 5.43825 5.51867 5.53076 5.65588 5.76134 5.89180 6.06818 6.15759 6.24090 6.30115 6.43586 6.52955 6.67848 6.69304 6.74157 6.86994 7.08388 7.29522 7.33799 8.06437 8.28276 8.50748 8.89202 9.69789 11.06781 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035740 B = 0.008470 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.240876 B = 3305.036811 C = 3748.480844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.031 3.969 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.608 4.608 8 H 0.055 0.945 9 C 0.185 3.815 10 H 0.019 0.981 11 C -0.139 4.139 12 C -0.138 4.138 13 C 0.104 3.896 14 H 0.059 0.941 15 C -0.067 4.067 16 C -0.088 4.088 17 C -0.125 4.125 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.119 4.119 21 O -0.362 6.362 22 H 0.279 0.721 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -9.463 7.100 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.178 4.178 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.645 4.645 8 H 0.073 0.927 9 C 0.130 3.870 10 H 0.036 0.964 11 C -0.177 4.177 12 C -0.176 4.176 13 C 0.045 3.955 14 H 0.077 0.923 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.138 4.138 21 O -0.282 6.282 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.334 -7.650 7.191 10.504 hybrid contribution 0.290 -1.932 -0.080 1.955 sum 0.623 -9.582 7.111 11.949 Atomic orbital electron populations 1.70668 1.06915 1.31765 1.43116 1.25863 0.96567 1.02664 0.92659 0.83581 0.74959 0.75361 0.76523 1.20696 1.21387 1.21374 1.22038 0.93744 0.90970 1.57748 0.92711 1.20475 0.87981 0.94301 0.84226 0.96386 1.22941 1.01867 0.97286 0.95569 1.23051 0.96650 0.98921 0.98993 1.21748 0.95415 0.87767 0.90556 0.92325 1.19886 0.97285 0.94286 0.95242 1.21226 0.98065 0.99036 0.92271 1.21182 0.99473 0.97710 0.95962 1.21062 1.00030 0.94620 0.99157 1.20980 1.01210 0.99103 0.93346 1.20917 0.99465 0.97528 0.95844 1.89238 1.73134 1.19590 1.46222 0.90906 0.93045 0.91187 0.91964 0.91231 0.84801 0.86340 0.86660 0.86545 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.56 55.43 0.75 -26.87 16 2 C 0.03 0.90 5.42 -17.82 -0.10 0.80 16 3 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.61 -17.40 8.78 -34.44 -0.30 -17.70 16 8 H 0.05 1.53 7.33 -52.48 -0.38 1.15 16 9 C 0.19 4.82 2.82 -27.31 -0.08 4.74 16 10 H 0.02 0.51 7.98 -51.93 -0.41 0.09 16 11 C -0.14 -2.93 6.63 -25.20 -0.17 -3.10 16 12 C -0.14 -2.59 6.57 -24.72 -0.16 -2.75 16 13 C 0.10 2.12 3.54 -26.83 -0.10 2.02 16 14 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 15 C -0.07 -1.24 5.09 -104.62 -0.53 -1.77 16 16 C -0.09 -1.66 9.38 -39.59 -0.37 -2.03 16 17 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 18 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 19 C -0.13 -1.77 10.05 -39.58 -0.40 -2.16 16 20 C -0.12 -1.85 9.71 -39.58 -0.38 -2.24 16 21 O -0.36 -9.33 8.83 -35.23 -0.31 -9.64 16 22 H 0.28 8.80 6.56 -40.82 -0.27 8.53 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 1.49 7.40 -51.93 -0.38 1.10 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 27 H 0.13 2.84 7.52 -52.48 -0.39 2.45 16 28 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -31.43 263.16 -8.08 -39.51 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.02 Total: 1.52 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -3.38 Total: -28.77 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.75 Total: -26.87 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.31 Total: -9.64 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.43 -8.08 -39.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306310366.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.590 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds