Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.87342 * 58.99115 * 9 7 2 11 11 C 1.54103 * 109.87856 * 179.97438 * 9 7 2 12 12 C 1.54810 * 104.18980 * 121.45150 * 11 9 7 13 13 C 1.55001 * 102.09029 * 20.87723 * 12 11 9 14 14 H 1.09004 * 110.61504 * 81.48433 * 13 12 11 15 15 C 1.50699 * 110.61842 * 204.31641 * 13 12 11 16 16 C 1.38239 * 120.00003 * 84.73142 * 15 13 12 17 17 C 1.38227 * 120.00031 * 179.76877 * 16 15 13 18 18 C 1.38240 * 120.00350 * 0.47768 * 17 16 15 19 19 C 1.38231 * 119.99601 * 359.80092 * 18 17 16 20 20 C 1.38235 * 120.00225 * 265.00379 * 15 13 12 21 21 O 1.43746 * 109.87780 * 297.82641 * 9 7 2 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.08998 * 110.49036 * 240.12542 * 11 9 7 24 24 H 1.08998 * 110.48784 * 2.77513 * 11 9 7 25 25 H 1.09000 * 110.90948 * 139.07854 * 12 11 9 26 26 H 1.09005 * 110.90659 * 262.68257 * 12 11 9 27 27 H 1.08005 * 119.99501 * 359.97438 * 16 15 13 28 28 H 1.08008 * 120.00182 * 180.25394 * 17 16 15 29 29 H 1.07991 * 120.00332 * 179.76782 * 18 17 16 30 30 H 1.07997 * 120.00027 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.00221 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6088 -2.5562 -0.8783 11 6 2.2442 -3.6775 0.0005 12 6 1.8899 -4.4723 1.2809 13 6 0.4401 -4.0029 1.5637 14 1 -0.2690 -4.5527 0.9448 15 6 0.1048 -4.1657 3.0239 16 6 0.4506 -3.1778 3.9268 17 6 0.1389 -3.3250 5.2654 18 6 -0.5099 -4.4646 5.7028 19 6 -0.8505 -5.4551 4.8009 20 6 -0.5434 -5.3056 3.4613 21 8 0.4598 -2.6067 1.1958 22 1 -0.4850 -0.8401 -0.0004 23 1 2.1012 -4.2970 -0.8848 24 1 3.2699 -3.3120 0.0500 25 1 1.9218 -5.5457 1.0937 26 1 2.5535 -4.2022 2.1025 27 1 0.9614 -2.2894 3.5858 28 1 0.4054 -2.5512 5.9703 29 1 -0.7501 -4.5813 6.7492 30 1 -1.3570 -6.3457 5.1426 31 1 -0.8094 -6.0797 2.7567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306310366.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = -52.543803 kcal Electronic energy + Delta-G solvation = -14442.494901 eV Core-core repulsion = 12073.319049 eV Total energy + Delta-G solvation = -2369.175852 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77488 -39.24934 -35.04388 -33.00728 -32.57494 -31.74692 -29.22014 -26.20648 -24.02720 -23.38458 -22.17963 -21.60073 -19.28284 -17.75295 -17.33856 -16.31427 -16.22703 -15.64668 -15.48700 -15.00626 -14.56363 -14.37879 -14.20393 -13.78253 -13.48784 -12.77253 -12.65748 -12.41208 -12.16840 -11.93402 -11.91417 -11.77924 -11.60518 -10.97064 -10.66742 -10.15012 -9.81967 -9.57735 -8.66696 -6.45406 0.41815 0.50554 1.50067 1.59189 1.78340 2.54921 2.81394 3.06155 3.47099 3.74894 3.89391 4.00654 4.10480 4.16977 4.28657 4.33099 4.47255 4.61335 4.70613 4.72570 4.86276 4.95687 5.07802 5.10829 5.20224 5.31187 5.55887 5.62107 5.75842 5.93389 6.06432 6.12598 6.46626 6.63150 7.47515 8.73377 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035740 B = 0.008470 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.240876 B = 3305.036811 C = 3748.480844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.117 2.883 4 H -0.283 1.283 5 H -0.263 1.263 6 H -0.273 1.273 7 C -0.624 4.624 8 H 0.055 0.945 9 C 0.176 3.824 10 H -0.011 1.011 11 C -0.133 4.133 12 C -0.124 4.124 13 C 0.095 3.905 14 H 0.068 0.932 15 C -0.092 4.092 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.120 4.120 21 O -0.395 6.395 22 H 0.262 0.738 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 -11.362 8.683 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.224 4.224 3 Si 0.937 3.063 4 H -0.208 1.208 5 H -0.188 1.188 6 H -0.198 1.198 7 C -0.661 4.661 8 H 0.073 0.927 9 C 0.120 3.880 10 H 0.006 0.994 11 C -0.171 4.171 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.085 0.915 15 C -0.092 4.092 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.138 4.138 21 O -0.315 6.315 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.585 -9.580 8.773 13.003 hybrid contribution 0.162 -1.453 -0.504 1.547 sum 0.746 -11.033 8.269 13.808 Atomic orbital electron populations 1.70803 1.08026 1.30650 1.46047 1.27443 0.96608 1.06802 0.91581 0.82976 0.74188 0.71070 0.78039 1.20836 1.18820 1.19802 1.22470 0.94099 0.92582 1.56990 0.92655 1.20402 0.88501 0.95534 0.83520 0.99384 1.22848 1.00047 0.96111 0.98071 1.22992 0.95178 1.00804 0.97222 1.22030 0.96804 0.85070 0.92368 0.91459 1.19855 0.99561 0.95955 0.93843 1.21047 1.00236 0.98372 0.94315 1.21391 0.99508 0.99262 0.94675 1.21515 0.98023 0.93246 1.01194 1.21480 0.99687 1.00161 0.92295 1.21193 0.98427 0.96706 0.97483 1.89150 1.73230 1.23436 1.45698 0.92792 0.90658 0.91620 0.87921 0.91905 0.89047 0.84830 0.82842 0.82469 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.59 13.56 21.45 0.29 -59.30 16 2 C -0.02 -1.40 5.42 84.65 0.46 -0.94 16 3 Si 1.12 51.89 29.90 68.60 2.05 53.94 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.62 -37.00 8.78 25.60 0.22 -36.78 16 8 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 9 C 0.18 9.54 2.82 30.22 0.09 9.63 16 10 H -0.01 -0.67 7.98 -2.39 -0.02 -0.68 16 11 C -0.13 -5.62 6.63 31.59 0.21 -5.41 16 12 C -0.12 -4.54 6.57 31.90 0.21 -4.33 16 13 C 0.10 3.92 3.54 30.53 0.11 4.03 16 14 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 15 C -0.09 -3.40 5.09 -19.87 -0.10 -3.50 16 16 C -0.12 -4.72 9.38 22.27 0.21 -4.52 16 17 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 18 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 19 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 20 C -0.12 -3.40 9.71 22.27 0.22 -3.19 16 21 O -0.39 -21.41 8.83 -148.98 -1.32 -22.72 16 22 H 0.26 17.50 6.56 -92.71 -0.61 16.89 16 23 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.07 2.79 7.40 -2.39 -0.02 2.78 16 25 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.06 2.36 8.05 -2.38 -0.02 2.34 16 27 H 0.09 4.23 7.52 -2.91 -0.02 4.21 16 28 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.15 2.52 8.06 -2.92 -0.02 2.50 16 30 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -72.18 263.16 4.58 -67.60 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.26 Total: 14.44 kcal Atomic # 6 Polarization: -56.25 SS G_CDS: 2.29 Total: -53.96 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.29 Total: -59.30 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.32 Total: -22.72 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -72.18 4.58 -67.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306310366.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.057 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds