Wall clock time and date at job start Mon Mar 30 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00374 * 2 1 4 4 H 1.48500 * 109.46817 * 269.99986 * 3 2 1 5 5 H 1.48494 * 109.46895 * 30.00167 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00148 * 3 2 1 7 7 C 1.37881 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99864 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.35214 * 299.30917 * 9 7 2 11 11 C 1.54939 * 110.31010 * 177.16617 * 9 7 2 12 12 C 1.55457 * 100.99002 * 204.68711 * 11 9 7 13 13 C 1.54381 * 102.18195 * 34.03873 * 12 11 9 14 14 H 1.08995 * 109.83037 * 98.30278 * 13 12 11 15 15 C 1.50706 * 109.82623 * 219.18342 * 13 12 11 16 16 C 1.38238 * 119.99775 * 264.81580 * 15 13 12 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 13 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38233 * 120.00212 * 84.83625 * 15 13 12 21 21 O 1.43237 * 107.66509 * 338.73872 * 13 12 11 22 22 H 0.97005 * 119.99541 * 0.02562 * 1 2 3 23 23 H 1.08997 * 111.12815 * 322.55628 * 11 9 7 24 24 H 1.09005 * 111.12871 * 86.67726 * 11 9 7 25 25 H 1.09002 * 110.83273 * 275.88806 * 12 11 9 26 26 H 1.09002 * 110.92400 * 152.22657 * 12 11 9 27 27 H 1.08005 * 120.00068 * 359.97438 * 16 15 13 28 28 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 31 31 H 1.07999 * 119.99956 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6278 -2.5771 0.8915 11 6 2.2389 -3.6906 -0.0707 12 6 1.3342 -4.7887 -0.6973 13 6 0.4299 -3.9666 -1.6406 14 1 0.8147 -4.0176 -2.6591 15 6 -0.9769 -4.5053 -1.5980 16 6 -1.3952 -5.4211 -2.5453 17 6 -2.6855 -5.9157 -2.5059 18 6 -3.5572 -5.4950 -1.5190 19 6 -3.1405 -4.5753 -0.5749 20 6 -1.8491 -4.0835 -0.6120 21 8 0.4445 -2.6093 -1.1830 22 1 -0.4850 0.8401 -0.0004 23 1 3.0840 -3.4620 -0.7198 24 1 2.5778 -3.9800 0.9241 25 1 0.7425 -5.2879 0.0700 26 1 1.9288 -5.5086 -1.2598 27 1 -0.7140 -5.7501 -3.3161 28 1 -3.0124 -6.6308 -3.2463 29 1 -4.5651 -5.8818 -1.4881 30 1 -3.8228 -4.2433 0.1935 31 1 -1.5225 -3.3675 0.1276 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306310378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:30 Heat of formation + Delta-G solvation = -28.411077 kcal Electronic energy + Delta-G solvation = -14437.467206 eV Core-core repulsion = 12069.337827 eV Total energy + Delta-G solvation = -2368.129378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.22677 -37.44559 -32.76634 -31.26355 -30.79066 -30.38548 -27.74708 -24.62034 -22.10695 -22.03277 -20.33765 -19.90905 -16.71065 -16.37852 -15.44023 -14.96058 -14.57830 -14.29474 -13.70194 -13.26794 -12.95462 -12.56866 -12.22627 -12.05810 -11.73820 -11.30764 -10.91141 -10.66400 -10.57438 -10.42781 -10.36037 -10.19149 -9.76121 -9.11332 -8.57429 -8.48353 -8.29858 -7.85878 -5.99899 -4.12865 1.78041 1.85680 3.32011 3.38437 3.40713 4.21091 4.43163 5.05126 5.26033 5.26674 5.36800 5.48358 5.54006 5.59033 5.76540 5.88229 6.02825 6.20420 6.29561 6.32585 6.41964 6.56275 6.63524 6.72333 6.79631 6.86256 6.98680 7.24164 7.46475 7.58102 7.89549 8.26125 8.62076 9.03234 9.58010 11.07484 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041177 B = 0.008110 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.832658 B = 3451.723059 C = 3859.788665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.210 3.790 10 H 0.027 0.973 11 C -0.148 4.148 12 C -0.145 4.145 13 C 0.107 3.893 14 H 0.067 0.933 15 C -0.080 4.080 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.087 4.087 21 O -0.346 6.346 22 H 0.261 0.739 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 -10.155 -2.146 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.154 3.846 10 H 0.044 0.956 11 C -0.185 4.185 12 C -0.183 4.183 13 C 0.048 3.952 14 H 0.085 0.915 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.105 4.105 21 O -0.266 6.266 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.283 -9.869 -2.227 10.636 hybrid contribution 0.425 0.705 -0.030 0.824 sum -2.858 -9.164 -2.257 9.861 Atomic orbital electron populations 1.70031 1.05984 1.26551 1.47167 1.25072 0.94783 0.99251 0.93683 0.86629 0.79926 0.83383 0.78225 1.20507 1.21134 1.19777 1.21108 0.92701 0.90098 1.53449 0.91899 1.20547 0.86744 0.92340 0.84921 0.95566 1.23376 0.99290 0.96059 0.99813 1.23131 0.97981 0.98295 0.98878 1.21452 0.89589 0.86426 0.97716 0.91546 1.20535 0.97275 0.95632 0.94597 1.20938 0.96044 0.98149 0.98872 1.20972 0.94082 1.00849 0.98927 1.21025 0.99208 0.98897 0.96085 1.21157 0.96347 0.97689 0.99154 1.21214 0.92868 0.98023 0.98436 1.88904 1.71879 1.19991 1.45791 0.92943 0.91519 0.91900 0.91591 0.91692 0.86635 0.86791 0.86876 0.86529 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.60 12.93 55.43 0.72 -24.88 16 2 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.08 8.81 -34.44 -0.30 -15.38 16 8 H 0.06 1.71 7.77 -52.49 -0.41 1.31 16 9 C 0.21 5.39 3.27 -26.86 -0.09 5.30 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 11 C -0.15 -3.06 6.53 -24.40 -0.16 -3.21 16 12 C -0.15 -2.64 6.55 -24.70 -0.16 -2.80 16 13 C 0.11 2.21 3.74 -27.16 -0.10 2.11 16 14 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 15 C -0.08 -1.53 4.88 -104.62 -0.51 -2.04 16 16 C -0.12 -1.97 9.69 -39.58 -0.38 -2.35 16 17 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 18 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 19 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 20 C -0.09 -1.71 9.36 -39.58 -0.37 -2.08 16 21 O -0.35 -9.04 9.34 -35.23 -0.33 -9.37 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.13 2.90 7.60 -52.49 -0.40 2.50 16 LS Contribution 265.79 15.07 4.01 4.01 Total: -1.00 -30.50 265.79 -8.14 -38.65 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.14 Total: 0.59 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -3.37 Total: -25.41 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.72 Total: -24.88 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.33 Total: -9.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.50 -8.14 -38.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306310378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.234 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds