Wall clock time and date at job start Mon Mar 30 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00362 * 2 1 4 4 H 1.48494 * 109.47250 * 240.00020 * 3 2 1 5 5 H 1.48509 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47373 * 119.99305 * 3 2 1 7 7 C 1.37882 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99822 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.82431 * 59.42909 * 9 7 2 11 11 C 1.54376 * 109.83383 * 180.41248 * 9 7 2 12 12 C 1.55304 * 102.25567 * 140.86742 * 11 9 7 13 13 C 1.54945 * 100.94045 * 325.86882 * 12 11 9 14 14 H 1.09002 * 110.31005 * 277.52751 * 13 12 11 15 15 C 1.50706 * 110.39154 * 155.40188 * 13 12 11 16 16 C 1.38237 * 119.99797 * 281.17094 * 15 13 12 17 17 C 1.38233 * 119.99950 * 179.81042 * 16 15 13 18 18 C 1.38241 * 119.99787 * 0.41834 * 17 16 15 19 19 C 1.38240 * 119.99878 * 359.81295 * 18 17 16 20 20 C 1.38231 * 119.99809 * 101.44678 * 15 13 12 21 21 O 1.43240 * 109.82902 * 298.54797 * 9 7 2 22 22 H 0.96993 * 119.99682 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.84711 * 259.06773 * 11 9 7 24 24 H 1.09010 * 110.84382 * 22.67585 * 11 9 7 25 25 H 1.08997 * 111.12440 * 207.95142 * 12 11 9 26 26 H 1.08995 * 111.12017 * 83.78614 * 12 11 9 27 27 H 1.08000 * 120.00307 * 0.02562 * 16 15 13 28 28 H 1.07993 * 119.99870 * 180.20894 * 17 16 15 29 29 H 1.08003 * 119.99812 * 179.79148 * 18 17 16 30 30 H 1.08002 * 119.99586 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00590 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6149 -2.5588 -0.8826 11 6 2.2468 -3.6789 0.0116 12 6 1.5535 -4.6865 0.9687 13 6 0.8762 -3.7200 1.9728 14 1 1.5911 -3.3999 2.7308 15 6 -0.3108 -4.3842 2.6218 16 6 -1.5093 -4.4774 1.9392 17 6 -2.5969 -5.0901 2.5330 18 6 -2.4885 -5.6018 3.8126 19 6 -1.2913 -5.5042 4.4969 20 6 -0.2026 -4.8950 3.9017 21 8 0.4500 -2.5978 1.1839 22 1 -0.4849 0.8400 -0.0004 23 1 2.3560 -4.1037 -0.9862 24 1 3.2127 -3.3675 0.4096 25 1 2.2854 -5.3217 1.4676 26 1 0.8126 -5.2852 0.4390 27 1 -1.5949 -4.0748 0.9408 28 1 -3.5322 -5.1660 1.9985 29 1 -3.3393 -6.0775 4.2778 30 1 -1.2069 -5.9037 5.4968 31 1 0.7325 -4.8185 4.4365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306310383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:32 Heat of formation + Delta-G solvation = -27.676439 kcal Electronic energy + Delta-G solvation = -14369.205461 eV Core-core repulsion = 12001.107939 eV Total energy + Delta-G solvation = -2368.097522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19639 -37.51163 -32.74322 -31.28633 -30.80847 -30.47383 -27.67793 -24.62103 -22.27767 -22.01419 -20.25279 -19.94522 -16.68027 -16.40608 -15.53562 -15.06251 -14.50640 -14.20689 -13.75236 -13.19725 -13.00289 -12.57962 -12.27298 -12.14632 -11.72426 -11.37882 -10.87246 -10.74345 -10.59364 -10.39756 -10.33738 -10.11744 -9.81941 -9.19386 -8.54590 -8.51991 -8.32664 -7.80032 -5.95722 -4.09819 1.72048 1.78996 3.33751 3.38573 3.40543 4.14607 4.45142 4.97438 5.22601 5.28791 5.32664 5.48737 5.53886 5.55024 5.79695 5.83775 5.95969 6.22023 6.27146 6.33469 6.39042 6.51970 6.60672 6.69759 6.80193 6.83121 6.91405 7.18257 7.39064 7.65887 7.90871 8.30531 8.61504 9.06269 9.61713 11.10833 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.007758 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.517432 B = 3608.239770 C = 3878.602610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.205 3.795 10 H 0.039 0.961 11 C -0.145 4.145 12 C -0.146 4.146 13 C 0.111 3.889 14 H 0.061 0.939 15 C -0.068 4.068 16 C -0.090 4.090 17 C -0.126 4.126 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.119 4.119 21 O -0.349 6.349 22 H 0.261 0.739 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -10.326 5.151 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.150 3.850 10 H 0.056 0.944 11 C -0.183 4.183 12 C -0.184 4.184 13 C 0.052 3.948 14 H 0.078 0.922 15 C -0.068 4.068 16 C -0.108 4.108 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.137 4.137 21 O -0.269 6.269 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.903 -10.067 5.185 11.483 hybrid contribution 0.616 0.843 0.049 1.045 sum -1.287 -9.224 5.235 10.684 Atomic orbital electron populations 1.70021 1.05981 1.26566 1.47285 1.25056 0.94730 0.99143 0.93741 0.86733 0.79745 0.83252 0.78627 1.20166 1.21201 1.20171 1.21359 0.92647 0.90818 1.53588 0.92348 1.20306 0.87783 0.91933 0.84986 0.94378 1.23221 1.00457 0.96449 0.98131 1.23240 0.99456 0.97938 0.97733 1.21587 0.91403 0.87762 0.94018 0.92172 1.20167 0.95949 0.96732 0.93965 1.21119 0.92128 0.96722 1.00804 1.21143 0.98617 0.99135 0.95537 1.21038 0.97508 1.01270 0.95292 1.20994 0.93420 1.00658 0.99549 1.20963 0.98696 0.99281 0.94729 1.88817 1.58469 1.44271 1.35348 0.92947 0.92167 0.91531 0.91713 0.91477 0.85353 0.86496 0.86781 0.86644 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.98 12.91 55.43 0.72 -25.27 16 2 C 0.08 2.27 5.41 -17.82 -0.10 2.18 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.55 -15.46 8.75 -34.44 -0.30 -15.77 16 8 H 0.06 1.60 7.52 -52.49 -0.39 1.20 16 9 C 0.21 5.32 3.36 -27.16 -0.09 5.23 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.14 -2.99 6.53 -24.79 -0.16 -3.16 16 12 C -0.15 -2.66 6.56 -24.48 -0.16 -2.82 16 13 C 0.11 2.31 3.64 -26.85 -0.10 2.22 16 14 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 15 C -0.07 -1.27 5.03 -104.62 -0.53 -1.80 16 16 C -0.09 -1.65 9.34 -39.58 -0.37 -2.02 16 17 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 18 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 19 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 20 C -0.12 -1.89 9.68 -39.59 -0.38 -2.28 16 21 O -0.35 -9.15 9.46 -35.23 -0.33 -9.49 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.07 1.36 7.66 -51.92 -0.40 0.97 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 27 H 0.13 2.52 7.72 -52.49 -0.41 2.12 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.65 8.05 -52.49 -0.42 1.23 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -30.94 265.60 -8.14 -39.08 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.13 Total: 0.05 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.38 Total: -25.00 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.72 Total: -25.27 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.33 Total: -9.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.94 -8.14 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306310383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.406 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds