Wall clock time and date at job start Mon Mar 30 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00362 * 2 1 4 4 H 1.48494 * 109.47250 * 240.00020 * 3 2 1 5 5 H 1.48509 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47373 * 119.99305 * 3 2 1 7 7 C 1.37882 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99822 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.82431 * 59.42909 * 9 7 2 11 11 C 1.54376 * 109.83383 * 180.41248 * 9 7 2 12 12 C 1.55304 * 102.25567 * 140.86742 * 11 9 7 13 13 C 1.54945 * 100.94045 * 325.86882 * 12 11 9 14 14 H 1.09002 * 110.31005 * 277.52751 * 13 12 11 15 15 C 1.50706 * 110.39154 * 155.40188 * 13 12 11 16 16 C 1.38237 * 119.99797 * 281.17094 * 15 13 12 17 17 C 1.38233 * 119.99950 * 179.81042 * 16 15 13 18 18 C 1.38241 * 119.99787 * 0.41834 * 17 16 15 19 19 C 1.38240 * 119.99878 * 359.81295 * 18 17 16 20 20 C 1.38231 * 119.99809 * 101.44678 * 15 13 12 21 21 O 1.43240 * 109.82902 * 298.54797 * 9 7 2 22 22 H 0.96993 * 119.99682 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.84711 * 259.06773 * 11 9 7 24 24 H 1.09010 * 110.84382 * 22.67585 * 11 9 7 25 25 H 1.08997 * 111.12440 * 207.95142 * 12 11 9 26 26 H 1.08995 * 111.12017 * 83.78614 * 12 11 9 27 27 H 1.08000 * 120.00307 * 0.02562 * 16 15 13 28 28 H 1.07993 * 119.99870 * 180.20894 * 17 16 15 29 29 H 1.08003 * 119.99812 * 179.79148 * 18 17 16 30 30 H 1.08002 * 119.99586 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00590 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6149 -2.5588 -0.8826 11 6 2.2468 -3.6789 0.0116 12 6 1.5535 -4.6865 0.9687 13 6 0.8762 -3.7200 1.9728 14 1 1.5911 -3.3999 2.7308 15 6 -0.3108 -4.3842 2.6218 16 6 -1.5093 -4.4774 1.9392 17 6 -2.5969 -5.0901 2.5330 18 6 -2.4885 -5.6018 3.8126 19 6 -1.2913 -5.5042 4.4969 20 6 -0.2026 -4.8950 3.9017 21 8 0.4500 -2.5978 1.1839 22 1 -0.4849 0.8400 -0.0004 23 1 2.3560 -4.1037 -0.9862 24 1 3.2127 -3.3675 0.4096 25 1 2.2854 -5.3217 1.4676 26 1 0.8126 -5.2852 0.4390 27 1 -1.5949 -4.0748 0.9408 28 1 -3.5322 -5.1660 1.9985 29 1 -3.3393 -6.0775 4.2778 30 1 -1.2069 -5.9037 5.4968 31 1 0.7325 -4.8185 4.4365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306310383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:32 Heat of formation + Delta-G solvation = -45.774970 kcal Electronic energy + Delta-G solvation = -14369.990273 eV Core-core repulsion = 12001.107939 eV Total energy + Delta-G solvation = -2368.882333 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65318 -39.07401 -34.78889 -32.87880 -32.49908 -31.69889 -29.44416 -26.49010 -23.75932 -23.30781 -22.03920 -21.45840 -18.62995 -17.89244 -17.14902 -16.69469 -16.25686 -15.67454 -15.26272 -14.83027 -14.34117 -14.15579 -13.85497 -13.67049 -13.59381 -12.78120 -12.73765 -12.43236 -12.35713 -12.08870 -11.86473 -11.65833 -11.52280 -11.10533 -10.67968 -9.94817 -9.76088 -9.46781 -8.12844 -6.35205 0.48659 0.56328 1.38737 1.41891 1.49470 2.40295 2.87365 3.10789 3.60993 3.86246 3.92228 4.10147 4.21645 4.26524 4.34826 4.53606 4.57739 4.69046 4.78004 4.87368 4.94365 5.08266 5.14485 5.20540 5.25973 5.56797 5.62505 5.66716 5.74559 5.86593 6.17809 6.18745 6.59525 7.04343 7.42058 8.93882 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.007758 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.517432 B = 3608.239770 C = 3878.602610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.566 4.566 8 H 0.063 0.937 9 C 0.197 3.803 10 H 0.001 0.999 11 C -0.137 4.137 12 C -0.130 4.130 13 C 0.101 3.899 14 H 0.057 0.943 15 C -0.094 4.094 16 C -0.118 4.118 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.124 4.124 21 O -0.385 6.385 22 H 0.260 0.740 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -11.633 6.949 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.181 4.181 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.604 4.604 8 H 0.081 0.919 9 C 0.141 3.859 10 H 0.018 0.982 11 C -0.174 4.174 12 C -0.167 4.167 13 C 0.043 3.957 14 H 0.074 0.926 15 C -0.094 4.094 16 C -0.137 4.137 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.142 4.142 21 O -0.305 6.305 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.454 -11.390 6.981 13.438 hybrid contribution 0.416 1.168 -0.453 1.320 sum -1.038 -10.222 6.528 12.173 Atomic orbital electron populations 1.70186 1.07766 1.27340 1.48789 1.25977 0.95590 1.03135 0.93352 0.85606 0.78406 0.78395 0.79148 1.18765 1.20909 1.19513 1.21820 0.93121 0.92262 1.53173 0.91885 1.20205 0.88124 0.93537 0.84032 0.98150 1.23101 0.99208 0.95161 0.99974 1.23168 0.99772 0.97221 0.96554 1.21807 0.92815 0.87084 0.93963 0.92559 1.20086 0.95239 0.98545 0.95517 1.21024 0.93705 0.98839 1.00108 1.21393 0.98327 0.98453 0.96574 1.21499 0.98767 0.99784 0.94246 1.21454 0.92476 0.99001 1.00901 1.21205 1.00399 0.99080 0.93545 1.88723 1.59106 1.46968 1.35728 0.93102 0.90426 0.91199 0.88218 0.91093 0.88542 0.84579 0.82990 0.82851 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.65 12.91 21.45 0.28 -56.37 16 2 C 0.02 1.25 5.41 84.66 0.46 1.71 16 3 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.57 -32.92 8.75 25.60 0.22 -32.70 16 8 H 0.06 3.49 7.52 -2.91 -0.02 3.47 16 9 C 0.20 10.65 3.36 30.32 0.10 10.75 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 11 C -0.14 -5.67 6.53 31.85 0.21 -5.46 16 12 C -0.13 -4.65 6.56 32.05 0.21 -4.44 16 13 C 0.10 4.29 3.64 30.51 0.11 4.40 16 14 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 15 C -0.09 -3.51 5.03 -19.86 -0.10 -3.61 16 16 C -0.12 -4.46 9.34 22.27 0.21 -4.25 16 17 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 18 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 19 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 20 C -0.12 -3.71 9.68 22.27 0.22 -3.50 16 21 O -0.39 -21.17 9.46 -148.98 -1.41 -22.58 16 22 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 23 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 24 H 0.07 2.82 7.66 -2.38 -0.02 2.80 16 25 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 27 H 0.10 4.13 7.72 -2.91 -0.02 4.11 16 28 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.13 3.45 8.05 -2.91 -0.02 3.43 16 Total: -1.00 -69.84 265.60 4.30 -65.54 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.10 Total: 12.42 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 2.31 Total: -46.20 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.41 Total: -22.58 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.84 4.30 -65.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306310383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.768 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds