Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00485 * 2 1 4 4 H 1.48501 * 109.46805 * 90.00196 * 3 2 1 5 5 H 1.48492 * 109.47001 * 210.00384 * 3 2 1 6 6 H 1.48503 * 109.47010 * 330.00107 * 3 2 1 7 7 C 1.37877 * 119.99396 * 180.27651 * 2 1 3 8 8 H 1.08008 * 120.00198 * 345.12939 * 7 2 1 9 9 C 1.50700 * 119.99954 * 165.12754 * 7 2 1 10 10 H 1.08998 * 109.67680 * 54.99490 * 9 7 2 11 11 C 1.53321 * 109.68320 * 294.47619 * 9 7 2 12 12 C 1.52730 * 108.38869 * 170.41086 * 11 9 7 13 13 C 1.50634 * 110.59381 * 51.09450 * 12 11 9 14 14 C 1.38907 * 117.75568 * 162.27365 * 13 12 11 15 15 C 1.37932 * 120.54564 * 179.76274 * 14 13 12 16 16 C 1.38271 * 119.77083 * 359.96701 * 15 14 13 17 17 C 1.37927 * 119.76833 * 0.11855 * 16 15 14 18 18 C 1.37661 * 122.56090 * 342.23157 * 13 12 11 19 19 C 1.50635 * 122.56432 * 0.72693 * 18 13 12 20 20 H 1.08994 * 109.25077 * 102.50094 * 19 18 13 21 21 O 1.42908 * 109.25414 * 221.92794 * 19 18 13 22 22 H 0.96995 * 120.01203 * 176.72576 * 1 2 3 23 23 H 1.09006 * 109.67658 * 290.12894 * 11 9 7 24 24 H 1.08998 * 109.68337 * 50.64136 * 11 9 7 25 25 H 1.08999 * 109.25756 * 171.38819 * 12 11 9 26 26 H 1.09007 * 109.25060 * 290.85133 * 12 11 9 27 27 H 1.08008 * 119.72668 * 359.78936 * 14 13 12 28 28 H 1.07994 * 120.11143 * 179.97438 * 15 14 13 29 29 H 1.07996 * 120.10956 * 180.13699 * 16 15 14 30 30 H 1.08003 * 119.72608 * 180.02562 * 17 16 15 31 31 H 0.96702 * 113.99710 * 301.09552 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5467 1.4400 -0.7001 6 1 1.4468 2.6526 -0.7000 7 6 2.0044 -1.1941 -0.0058 8 1 1.4914 -2.1149 0.2298 9 6 3.4735 -1.2145 -0.3408 10 1 4.0097 -0.5313 0.3178 11 6 3.6763 -0.7905 -1.8002 12 6 5.1711 -0.5887 -2.0401 13 6 5.9495 -1.7912 -1.5741 14 6 7.2468 -1.9447 -2.0462 15 6 8.0131 -3.0220 -1.6528 16 6 7.4866 -3.9571 -0.7809 17 6 6.1980 -3.8074 -0.3124 18 6 5.4237 -2.7247 -0.7097 19 6 4.0205 -2.6303 -0.1701 20 1 3.3809 -3.3301 -0.7079 21 8 4.0256 -2.9693 1.2182 22 1 -0.4852 -0.8385 -0.0480 23 1 3.2997 -1.5686 -2.4642 24 1 3.1444 0.1421 -1.9889 25 1 5.3470 -0.4373 -3.1051 26 1 5.5076 0.2911 -1.4917 27 1 7.6591 -1.2142 -2.7266 28 1 9.0208 -3.1347 -2.0245 29 1 8.0825 -4.8016 -0.4676 30 1 5.7876 -4.5380 0.3690 31 1 4.3610 -3.8568 1.4051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306501454.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = -38.354261 kcal Electronic energy + Delta-G solvation = -14714.292173 eV Core-core repulsion = 12345.731626 eV Total energy + Delta-G solvation = -2368.560547 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81328 -36.54240 -34.95060 -32.53464 -30.99249 -29.83636 -28.05912 -24.58416 -22.71936 -21.60218 -21.07330 -18.59609 -17.59015 -17.13903 -15.59096 -15.28258 -14.82989 -14.12126 -13.83730 -13.32876 -12.97646 -12.88763 -12.35448 -12.11442 -11.77534 -11.64695 -11.24589 -10.79408 -10.63820 -10.34423 -10.23089 -9.77644 -9.55522 -9.26659 -8.70083 -8.53040 -8.25147 -8.20063 -6.37565 -3.98036 1.58586 1.62075 3.44564 3.48333 3.62912 3.97874 4.55971 4.99277 5.05979 5.07028 5.17754 5.25451 5.37830 5.60557 5.68345 5.83309 5.91350 6.01637 6.15730 6.23135 6.39862 6.42961 6.59972 6.66149 6.74042 6.80632 7.11037 7.13049 7.26884 7.47604 8.13055 8.36463 8.46135 8.97484 9.68553 11.01706 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041214 B = 0.010036 C = 0.008682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.212442 B = 2789.378354 C = 3224.389542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 1.043 2.957 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.288 1.288 7 C -0.584 4.584 8 H 0.057 0.943 9 C 0.032 3.968 10 H 0.032 0.968 11 C -0.114 4.114 12 C -0.090 4.090 13 C -0.058 4.058 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.122 4.122 18 C -0.101 4.101 19 C 0.158 3.842 20 H 0.057 0.943 21 O -0.545 6.545 22 H 0.267 0.733 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.175 -5.042 -3.976 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.872 3.128 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.622 4.622 8 H 0.075 0.925 9 C 0.012 3.988 10 H 0.050 0.950 11 C -0.152 4.152 12 C -0.127 4.127 13 C -0.058 4.058 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.148 4.148 17 C -0.140 4.140 18 C -0.101 4.101 19 C 0.100 3.900 20 H 0.075 0.925 21 O -0.348 6.348 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.714 -2.783 -3.886 14.523 hybrid contribution 0.540 -2.396 -0.071 2.457 sum 14.254 -5.178 -3.957 15.673 Atomic orbital electron populations 1.70807 1.07029 1.30266 1.46524 1.25744 0.96181 1.02385 0.93250 0.84117 0.75802 0.75652 0.77270 1.21407 1.19499 1.21390 1.21901 0.92643 0.96059 1.51601 0.92524 1.18999 0.97749 0.89908 0.92103 0.94960 1.22007 0.92086 1.01613 0.99524 1.20686 0.97046 0.94931 0.99999 1.19781 0.94031 0.95930 0.96065 1.21176 0.94128 0.98305 1.00850 1.20972 0.99480 0.95303 0.98869 1.20939 0.95635 0.99445 0.98771 1.21054 0.94742 0.97797 1.00405 1.20816 0.98255 0.94101 0.96957 1.20776 0.88514 0.99912 0.80827 0.92516 1.86785 1.87553 1.35708 1.24790 0.92337 0.92694 0.91288 0.91668 0.90850 0.86444 0.86568 0.86544 0.86630 0.80129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.42 13.70 55.43 0.76 -27.66 16 2 C 0.03 0.83 5.32 -17.82 -0.09 0.73 16 3 Si 1.04 25.48 26.17 -169.99 -4.45 21.03 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.27 -5.89 5.55 56.52 0.31 -5.58 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.58 -16.73 8.69 -34.44 -0.30 -17.03 16 8 H 0.06 1.76 8.00 -52.48 -0.42 1.34 16 9 C 0.03 0.76 1.32 -91.74 -0.12 0.64 16 10 H 0.03 0.82 6.80 -51.93 -0.35 0.47 16 11 C -0.11 -2.44 4.47 -26.70 -0.12 -2.56 16 12 C -0.09 -1.59 5.67 -28.05 -0.16 -1.75 16 13 C -0.06 -1.02 5.74 -104.62 -0.60 -1.62 16 14 C -0.13 -1.86 9.61 -39.45 -0.38 -2.24 16 15 C -0.13 -1.70 10.05 -39.68 -0.40 -2.09 16 16 C -0.13 -1.74 10.05 -39.68 -0.40 -2.14 16 17 C -0.12 -1.87 9.20 -39.45 -0.36 -2.23 16 18 C -0.10 -1.85 5.57 -104.62 -0.58 -2.43 16 19 C 0.16 3.36 2.82 -28.05 -0.08 3.28 16 20 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 21 O -0.55 -11.46 13.01 -35.23 -0.46 -11.92 16 22 H 0.27 8.29 8.72 -40.82 -0.36 7.93 16 23 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 24 H 0.07 1.52 5.14 -51.93 -0.27 1.25 16 25 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.12 1.44 8.05 -52.48 -0.42 1.02 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.49 6.61 -52.48 -0.35 1.14 16 31 H 0.35 5.49 7.31 45.56 0.33 5.82 16 LS Contribution 250.37 15.07 3.77 3.77 Total: -1.00 -32.16 250.37 -7.22 -39.37 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.25 Total: 4.84 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -3.60 Total: -29.44 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.76 Total: -27.66 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.46 Total: -11.92 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.45 Total: 21.03 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.16 -7.22 -39.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501454.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.018 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds