Wall clock time and date at job start Mon Mar 30 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20758 * 120.00015 * 2 1 4 4 C 1.50704 * 119.99701 * 180.02562 * 2 1 3 5 5 C 1.50707 * 109.46808 * 180.02562 * 4 2 1 6 6 C 1.38659 * 119.74339 * 270.01684 * 5 4 2 7 7 C 1.37599 * 120.24337 * 179.97438 * 6 5 4 8 8 C 1.40737 * 119.74483 * 0.02562 * 7 6 5 9 9 C 1.41396 * 120.23842 * 180.26938 * 8 7 6 10 10 H 1.08004 * 119.99686 * 149.50628 * 9 8 7 11 11 C 1.39937 * 120.00618 * 329.50656 * 9 8 7 12 12 N 1.30819 * 120.00394 * 162.22985 * 11 9 8 13 13 Si 1.86805 * 119.99899 * 342.22985 * 11 9 8 14 14 H 1.48500 * 109.47093 * 95.38550 * 13 11 9 15 15 H 1.48502 * 109.47038 * 215.38216 * 13 11 9 16 16 H 1.48506 * 109.47019 * 335.38301 * 13 11 9 17 17 C 1.40692 * 119.51432 * 359.97438 * 8 7 6 18 18 C 1.50697 * 120.12816 * 180.02562 * 17 8 7 19 19 C 1.37643 * 119.74495 * 0.02562 * 17 8 7 20 20 H 1.09006 * 109.47300 * 270.00116 * 1 2 3 21 21 H 1.08997 * 109.47141 * 29.99710 * 1 2 3 22 22 H 1.08996 * 109.47133 * 149.99966 * 1 2 3 23 23 H 1.08988 * 109.47207 * 59.99824 * 4 2 1 24 24 H 1.08997 * 109.47033 * 299.99340 * 4 2 1 25 25 H 1.07993 * 119.87717 * 0.02562 * 6 5 4 26 26 H 1.07997 * 120.12395 * 180.02562 * 7 6 5 27 27 H 0.96998 * 120.00387 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47324 * 89.99986 * 18 17 8 29 29 H 1.09005 * 109.46867 * 209.99985 * 18 17 8 30 30 H 1.09004 * 109.47323 * 329.99413 * 18 17 8 31 31 H 1.08001 * 119.87837 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7422 -1.0298 0.0002 6 6 4.4189 -0.9029 -1.2034 7 6 5.7716 -0.6510 -1.2147 8 6 6.4681 -0.5226 0.0015 9 6 7.8571 -0.2580 0.0020 10 1 8.2989 0.3064 0.8099 11 6 8.6593 -0.7275 -1.0440 12 7 9.8452 -0.2116 -1.2412 13 14 8.0369 -2.0910 -2.1589 14 1 7.4283 -1.4963 -3.3759 15 1 9.1705 -2.9670 -2.5499 16 1 7.0171 -2.8938 -1.4371 17 6 5.7711 -0.6532 1.2166 18 6 6.5030 -0.5178 2.5268 19 6 4.4180 -0.9053 1.2040 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 1.9971 -1.8763 -0.8907 24 1 1.9972 -1.8770 0.8892 25 1 3.8822 -1.0014 -2.1353 26 1 6.2966 -0.5521 -2.1532 27 1 10.4012 -0.5368 -1.9665 28 1 6.4914 0.5252 2.8435 29 1 6.0129 -1.1323 3.2820 30 1 7.5343 -0.8484 2.4028 31 1 3.8808 -1.0064 2.1355 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306818917.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:15 Heat of formation + Delta-G solvation = -55.769800 kcal Electronic energy + Delta-G solvation = -14187.389725 eV Core-core repulsion = 11818.073983 eV Total energy + Delta-G solvation = -2369.315742 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61517 -39.41283 -35.70235 -34.02946 -32.76201 -31.47147 -29.14146 -27.78164 -25.42948 -23.11555 -21.42173 -20.20289 -19.23553 -17.44302 -16.52574 -16.46941 -16.27887 -15.74645 -15.47236 -15.04648 -14.63041 -14.31668 -13.78910 -13.44119 -13.24244 -13.17758 -12.88490 -12.85397 -12.67516 -12.44008 -12.25861 -11.90188 -11.54954 -11.35445 -11.00507 -10.47172 -9.32807 -9.19281 -8.87379 -6.43936 0.77830 0.88515 1.22013 1.24233 1.37983 1.47000 2.12700 2.57228 3.34481 3.63968 4.08481 4.21364 4.35714 4.44081 4.58100 4.61907 4.74329 4.79710 4.89038 4.94510 4.98467 5.01873 5.12888 5.24184 5.30478 5.37956 5.73694 5.82235 5.99762 6.05810 6.29970 6.46299 6.78929 6.82473 6.89368 8.20976 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.008639 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.495173 B = 3240.392623 C = 3612.840693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.347 3.653 3 O -0.508 6.508 4 C -0.112 4.112 5 C -0.184 4.184 6 C -0.087 4.087 7 C -0.250 4.250 8 C 0.066 3.934 9 C -0.479 4.479 10 H 0.059 0.941 11 C 0.046 3.954 12 N -0.855 5.855 13 Si 0.965 3.035 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.253 1.253 17 C -0.195 4.195 18 C -0.084 4.084 19 C -0.079 4.079 20 H 0.111 0.889 21 H 0.076 0.924 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.291 0.709 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 -6.034 1.284 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.226 3.774 3 O -0.385 6.385 4 C -0.149 4.149 5 C -0.185 4.185 6 C -0.105 4.105 7 C -0.269 4.269 8 C 0.063 3.937 9 C -0.509 4.509 10 H 0.077 0.923 11 C -0.168 4.168 12 N -0.482 5.482 13 Si 0.789 3.211 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.176 1.176 17 C -0.197 4.197 18 C -0.140 4.140 19 C -0.097 4.097 20 H 0.130 0.870 21 H 0.095 0.905 22 H 0.132 0.868 23 H 0.139 0.861 24 H 0.143 0.857 25 H 0.135 0.865 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.614 -5.441 1.191 16.578 hybrid contribution 0.724 -0.013 -0.590 0.934 sum -14.890 -5.453 0.602 15.868 Atomic orbital electron populations 1.22290 0.91084 1.05745 1.05903 1.25451 0.93466 0.89972 0.68515 1.90445 1.73516 1.36919 1.37587 1.21069 0.90064 0.97206 1.06580 1.19389 0.95798 1.10881 0.92443 1.20783 0.93455 0.98546 0.97698 1.21107 0.95476 1.13745 0.96559 1.17823 0.93260 0.90444 0.92132 1.19422 0.92445 1.32086 1.06949 0.92265 1.26795 0.94485 0.98257 0.97251 1.69728 1.11226 1.37910 1.29345 0.85489 0.78147 0.78831 0.78613 1.19040 1.20339 1.17625 1.20207 0.95025 1.09524 0.94907 1.20420 0.99534 1.00397 0.93689 1.20734 0.92981 0.98609 0.97404 0.87043 0.90460 0.86754 0.86063 0.85659 0.86495 0.89128 0.89828 0.93469 0.90811 0.93438 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 10.25 71.24 0.73 -2.11 16 2 C 0.35 9.13 7.26 29.10 0.21 9.34 16 3 O -0.51 -19.64 16.77 -1.44 -0.02 -19.66 16 4 C -0.11 -2.80 5.74 29.11 0.17 -2.63 16 5 C -0.18 -7.06 4.40 -19.67 -0.09 -7.14 16 6 C -0.09 -3.74 9.67 22.22 0.21 -3.52 16 7 C -0.25 -12.62 7.18 22.73 0.16 -12.46 16 8 C 0.07 3.54 5.09 -21.29 -0.11 3.43 16 9 C -0.48 -27.99 8.53 23.46 0.20 -27.79 16 10 H 0.06 3.69 7.24 -2.91 -0.02 3.67 16 11 C 0.05 2.55 5.41 85.26 0.46 3.01 16 12 N -0.85 -48.84 13.93 21.82 0.30 -48.53 16 13 Si 0.97 44.87 24.52 68.60 1.68 46.56 16 14 H -0.26 -11.83 6.72 99.48 0.67 -11.16 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.25 -11.89 6.86 99.48 0.68 -11.21 16 17 C -0.20 -9.32 5.94 -19.41 -0.12 -9.44 16 18 C -0.08 -3.51 9.41 71.24 0.67 -2.84 16 19 C -0.08 -3.25 9.32 22.22 0.21 -3.04 16 20 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 21 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.11 0.96 8.12 -2.39 -0.02 0.94 16 23 H 0.12 2.34 8.08 -2.39 -0.02 2.32 16 24 H 0.13 2.33 8.08 -2.39 -0.02 2.31 16 25 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 26 H 0.09 4.62 4.77 -2.91 -0.01 4.61 16 27 H 0.29 14.98 8.30 -92.71 -0.77 14.22 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.52 8.09 -2.38 -0.02 2.51 16 30 H 0.05 2.14 6.87 -2.39 -0.02 2.12 16 31 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -70.75 264.20 5.73 -65.02 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.05 Total: 11.80 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 2.72 Total: -55.19 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.30 Total: -48.53 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.02 Total: -19.66 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.68 Total: 46.56 kcal Total: -70.75 5.73 -65.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306818917.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.252 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds