Wall clock time and date at job start Mon Mar 30 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 119.99737 * 2 1 4 4 C 1.50696 * 120.00105 * 180.02562 * 2 1 3 5 5 C 1.50704 * 109.47278 * 180.02562 * 4 2 1 6 6 C 1.38650 * 119.74699 * 264.99527 * 5 4 2 7 7 C 1.37597 * 120.24890 * 179.69849 * 6 5 4 8 8 C 1.40732 * 119.74709 * 0.27873 * 7 6 5 9 9 C 1.41388 * 120.24625 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00048 * 155.24291 * 9 8 7 11 11 C 1.39939 * 120.00072 * 335.24567 * 9 8 7 12 12 N 1.30827 * 120.00397 * 342.27121 * 11 9 8 13 13 Si 1.86808 * 120.00068 * 162.27390 * 11 9 8 14 14 H 1.48495 * 109.46905 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47136 * 119.99965 * 13 11 9 16 16 H 1.48499 * 109.46713 * 239.99832 * 13 11 9 17 17 C 1.40705 * 119.50525 * 359.97438 * 8 7 6 18 18 C 1.37630 * 119.74916 * 359.97438 * 17 8 7 19 19 C 1.50694 * 119.87836 * 179.97438 * 18 17 8 20 20 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47218 * 299.99748 * 1 2 3 22 22 H 1.08996 * 109.47178 * 59.99884 * 1 2 3 23 23 H 1.08997 * 109.47817 * 59.99366 * 4 2 1 24 24 H 1.09003 * 109.47093 * 299.99649 * 4 2 1 25 25 H 1.08006 * 119.87896 * 359.97438 * 6 5 4 26 26 H 1.08004 * 120.12591 * 180.29731 * 7 6 5 27 27 H 0.96999 * 120.00082 * 179.97438 * 12 11 9 28 28 H 1.07999 * 120.11940 * 180.02562 * 17 8 7 29 29 H 1.08996 * 109.47320 * 89.99910 * 19 18 17 30 30 H 1.08999 * 109.47344 * 210.00617 * 19 18 17 31 31 H 1.09007 * 109.47050 * 330.00010 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7422 -1.0297 0.0002 6 6 4.4382 -1.0064 -1.1987 7 6 5.7900 -0.7499 -1.2106 8 6 6.4671 -0.5165 0.0008 9 6 7.8559 -0.2513 0.0009 10 1 8.2997 0.3035 0.8143 11 6 8.6554 -0.7078 -1.0530 12 7 8.2174 -1.6528 -1.8447 13 14 10.3482 0.0322 -1.3296 14 1 10.6054 1.0762 -0.3053 15 1 11.3777 -1.0326 -1.2210 16 1 10.4070 0.6415 -2.6825 17 6 5.7514 -0.5478 1.2119 18 6 4.3995 -0.8053 1.1998 19 6 3.6303 -0.8402 2.4951 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.9972 -1.8764 -0.8907 24 1 1.9972 -1.8770 0.8892 25 1 3.9165 -1.1859 -2.1273 26 1 6.3293 -0.7275 -2.1461 27 1 8.7715 -1.9689 -2.5754 28 1 6.2610 -0.3696 2.1473 29 1 3.2540 0.1575 2.7212 30 1 2.7931 -1.5319 2.4021 31 1 4.2876 -1.1714 3.2992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307101709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:17 Heat of formation + Delta-G solvation = -36.095526 kcal Electronic energy + Delta-G solvation = -14162.755255 eV Core-core repulsion = 11794.292653 eV Total energy + Delta-G solvation = -2368.462601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14567 -37.41244 -34.08703 -31.66214 -31.05252 -29.93289 -27.49729 -25.73134 -23.95208 -20.59356 -20.06565 -18.84502 -16.82472 -15.43188 -15.26321 -15.00731 -14.82170 -13.79923 -13.77330 -13.30999 -12.78378 -12.35596 -12.16537 -12.09029 -11.85169 -11.50366 -11.45946 -11.11206 -11.00890 -10.81279 -10.43225 -10.24339 -9.52089 -9.35639 -9.17476 -8.99658 -7.32638 -7.10170 -6.70805 -4.28665 2.47428 2.78482 3.09398 3.10971 3.16271 3.21450 3.97542 4.48720 4.77402 5.26605 5.44511 5.60455 5.69540 5.79627 5.83795 5.97672 6.14030 6.14832 6.39599 6.42768 6.44703 6.60522 7.01073 7.12615 7.33335 7.47015 7.69024 7.91574 8.07712 8.12481 8.17449 8.36050 8.70633 8.95925 9.04664 10.23998 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.051487 B = 0.007134 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.697037 B = 3924.082693 C = 4121.455416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.345 3.655 3 O -0.444 6.444 4 C -0.109 4.109 5 C -0.201 4.201 6 C -0.091 4.091 7 C -0.165 4.165 8 C 0.113 3.887 9 C -0.463 4.463 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.796 5.796 13 Si 0.906 3.094 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.272 1.272 17 C -0.222 4.222 18 C -0.052 4.052 19 C -0.107 4.107 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.279 0.721 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -0.783 1.848 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.219 3.781 3 O -0.317 6.317 4 C -0.146 4.146 5 C -0.202 4.202 6 C -0.109 4.109 7 C -0.184 4.184 8 C 0.110 3.890 9 C -0.493 4.493 10 H 0.095 0.905 11 C -0.141 4.141 12 N -0.421 5.421 13 Si 0.731 3.269 14 H -0.184 1.184 15 H -0.200 1.200 16 H -0.197 1.197 17 C -0.241 4.241 18 C -0.052 4.052 19 C -0.164 4.164 20 H 0.095 0.905 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.134 0.866 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.772 -0.369 1.655 8.934 hybrid contribution 0.722 0.117 -0.271 0.780 sum -8.050 -0.253 1.384 8.172 Atomic orbital electron populations 1.22310 0.96000 1.03891 1.03992 1.24857 0.90814 0.91447 0.70997 1.90406 1.71830 1.35058 1.34361 1.20879 0.94926 0.95917 1.02899 1.18460 0.91978 1.16337 0.93453 1.20462 0.94821 1.00712 0.94954 1.21252 0.92459 1.06105 0.98602 1.17603 0.93001 0.87645 0.90704 1.19602 0.92593 1.31316 1.05762 0.90503 1.25897 1.00453 0.93072 0.94681 1.69842 1.37968 1.20099 1.14225 0.86300 0.81414 0.79972 0.79242 1.18425 1.20045 1.19746 1.20795 0.93337 1.13092 0.96885 1.19072 0.93876 0.99444 0.92830 1.20737 0.99152 1.00450 0.96037 0.90479 0.89784 0.89768 0.89561 0.89258 0.89766 0.86578 0.91045 0.89121 0.92823 0.92975 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 10.33 36.01 0.37 -1.87 16 2 C 0.34 5.63 7.26 -29.04 -0.21 5.42 16 3 O -0.44 -9.40 16.77 6.00 0.10 -9.30 16 4 C -0.11 -1.82 5.17 -29.03 -0.15 -1.97 16 5 C -0.20 -4.49 4.40 -104.33 -0.46 -4.95 16 6 C -0.09 -2.21 9.65 -39.66 -0.38 -2.59 16 7 C -0.16 -4.47 8.70 -38.87 -0.34 -4.81 16 8 C 0.11 3.14 5.57 -106.83 -0.60 2.55 16 9 C -0.46 -12.75 9.05 -37.75 -0.34 -13.09 16 10 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 11 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 12 N -0.80 -21.09 10.97 55.55 0.61 -20.48 16 13 Si 0.91 19.19 29.59 -169.99 -5.03 14.16 16 14 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 C -0.22 -5.70 9.44 -38.87 -0.37 -6.07 16 18 C -0.05 -1.20 5.87 -104.71 -0.61 -1.82 16 19 C -0.11 -1.96 9.59 36.00 0.35 -1.62 16 20 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 24 H 0.09 1.29 6.12 -51.93 -0.32 0.98 16 25 H 0.08 1.84 8.06 -52.48 -0.42 1.41 16 26 H 0.12 3.23 6.18 -52.48 -0.32 2.91 16 27 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 28 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.82 6.00 -51.93 -0.31 0.51 16 31 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -30.64 268.00 -6.98 -37.62 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.87 Total: 2.91 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -2.83 Total: -28.95 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.61 Total: -20.48 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.10 Total: -9.30 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.64 -6.98 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307101709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.523 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds