Wall clock time and date at job start Mon Mar 30 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 119.99737 * 2 1 4 4 C 1.50696 * 120.00105 * 180.02562 * 2 1 3 5 5 C 1.50704 * 109.47278 * 180.02562 * 4 2 1 6 6 C 1.38650 * 119.74699 * 264.99527 * 5 4 2 7 7 C 1.37597 * 120.24890 * 179.69849 * 6 5 4 8 8 C 1.40732 * 119.74709 * 0.27873 * 7 6 5 9 9 C 1.41388 * 120.24625 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00048 * 155.24291 * 9 8 7 11 11 C 1.39939 * 120.00072 * 335.24567 * 9 8 7 12 12 N 1.30827 * 120.00397 * 342.27121 * 11 9 8 13 13 Si 1.86808 * 120.00068 * 162.27390 * 11 9 8 14 14 H 1.48495 * 109.46905 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47136 * 119.99965 * 13 11 9 16 16 H 1.48499 * 109.46713 * 239.99832 * 13 11 9 17 17 C 1.40705 * 119.50525 * 359.97438 * 8 7 6 18 18 C 1.37630 * 119.74916 * 359.97438 * 17 8 7 19 19 C 1.50694 * 119.87836 * 179.97438 * 18 17 8 20 20 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47218 * 299.99748 * 1 2 3 22 22 H 1.08996 * 109.47178 * 59.99884 * 1 2 3 23 23 H 1.08997 * 109.47817 * 59.99366 * 4 2 1 24 24 H 1.09003 * 109.47093 * 299.99649 * 4 2 1 25 25 H 1.08006 * 119.87896 * 359.97438 * 6 5 4 26 26 H 1.08004 * 120.12591 * 180.29731 * 7 6 5 27 27 H 0.96999 * 120.00082 * 179.97438 * 12 11 9 28 28 H 1.07999 * 120.11940 * 180.02562 * 17 8 7 29 29 H 1.08996 * 109.47320 * 89.99910 * 19 18 17 30 30 H 1.08999 * 109.47344 * 210.00617 * 19 18 17 31 31 H 1.09007 * 109.47050 * 330.00010 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7422 -1.0297 0.0002 6 6 4.4382 -1.0064 -1.1987 7 6 5.7900 -0.7499 -1.2106 8 6 6.4671 -0.5165 0.0008 9 6 7.8559 -0.2513 0.0009 10 1 8.2997 0.3035 0.8143 11 6 8.6554 -0.7078 -1.0530 12 7 8.2174 -1.6528 -1.8447 13 14 10.3482 0.0322 -1.3296 14 1 10.6054 1.0762 -0.3053 15 1 11.3777 -1.0326 -1.2210 16 1 10.4070 0.6415 -2.6825 17 6 5.7514 -0.5478 1.2119 18 6 4.3995 -0.8053 1.1998 19 6 3.6303 -0.8402 2.4951 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.9972 -1.8764 -0.8907 24 1 1.9972 -1.8770 0.8892 25 1 3.9165 -1.1859 -2.1273 26 1 6.3293 -0.7275 -2.1461 27 1 8.7715 -1.9689 -2.5754 28 1 6.2610 -0.3696 2.1473 29 1 3.2540 0.1575 2.7212 30 1 2.7931 -1.5319 2.4021 31 1 4.2876 -1.1714 3.2992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307101709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:16 Heat of formation + Delta-G solvation = -53.787621 kcal Electronic energy + Delta-G solvation = -14163.522441 eV Core-core repulsion = 11794.292653 eV Total energy + Delta-G solvation = -2369.229788 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63161 -39.16411 -35.96629 -33.36353 -32.76968 -31.29231 -29.05794 -27.48731 -25.70668 -22.45990 -21.82868 -20.25639 -18.79250 -17.24361 -16.54665 -16.50904 -16.34640 -15.52264 -15.33947 -14.97181 -14.34890 -14.05876 -13.69396 -13.34089 -13.25846 -13.05826 -12.94603 -12.70625 -12.64126 -12.48636 -12.14580 -12.03604 -11.32605 -11.25690 -11.00234 -10.46209 -9.27417 -9.00728 -8.63802 -6.33155 0.95805 1.13137 1.23632 1.34907 1.48058 1.51035 2.19655 2.68601 3.43909 3.78478 4.12815 4.32012 4.40249 4.48446 4.53700 4.69084 4.80669 4.81359 4.89246 4.98424 5.06355 5.13754 5.15815 5.30228 5.37318 5.55932 5.75829 6.00575 6.13409 6.24516 6.42056 6.72223 6.84719 6.94732 7.06424 8.33831 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.051487 B = 0.007134 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.697037 B = 3924.082693 C = 4121.455416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.349 3.651 3 O -0.505 6.505 4 C -0.114 4.114 5 C -0.195 4.195 6 C -0.103 4.103 7 C -0.195 4.195 8 C 0.076 3.924 9 C -0.506 4.506 10 H 0.070 0.930 11 C 0.034 3.966 12 N -0.828 5.828 13 Si 0.983 3.017 14 H -0.261 1.261 15 H -0.262 1.262 16 H -0.264 1.264 17 C -0.246 4.246 18 C -0.062 4.062 19 C -0.102 4.102 20 H 0.111 0.889 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.287 0.713 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 -1.430 2.271 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.228 3.772 3 O -0.382 6.382 4 C -0.151 4.151 5 C -0.196 4.196 6 C -0.121 4.121 7 C -0.215 4.215 8 C 0.074 3.926 9 C -0.536 4.536 10 H 0.088 0.912 11 C -0.180 4.180 12 N -0.455 5.455 13 Si 0.803 3.197 14 H -0.184 1.184 15 H -0.186 1.186 16 H -0.188 1.188 17 C -0.266 4.266 18 C -0.062 4.062 19 C -0.158 4.158 20 H 0.130 0.870 21 H 0.116 0.884 22 H 0.113 0.887 23 H 0.132 0.868 24 H 0.141 0.859 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.017 -1.043 2.085 11.261 hybrid contribution 1.233 0.257 -0.372 1.313 sum -9.784 -0.786 1.712 9.964 Atomic orbital electron populations 1.22267 0.91003 1.06608 1.05082 1.25411 0.93390 0.89883 0.68545 1.90419 1.73497 1.36764 1.37507 1.21087 0.90719 0.97394 1.05877 1.19112 0.95337 1.12895 0.92212 1.20824 0.94048 1.00194 0.97029 1.21223 0.93931 1.08603 0.97716 1.17983 0.93823 0.88999 0.91833 1.19811 0.93323 1.33245 1.07193 0.91213 1.26758 1.04512 0.92909 0.93789 1.69890 1.39801 1.20965 1.14816 0.85164 0.76183 0.79164 0.79174 1.18450 1.18616 1.18837 1.21042 0.95071 1.14225 0.96262 1.19658 0.93275 0.97721 0.95590 1.20759 0.99801 1.01715 0.93529 0.87043 0.88375 0.88747 0.86812 0.85930 0.87649 0.88542 0.90218 0.89199 0.92311 0.89553 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 10.33 71.24 0.74 -2.51 16 2 C 0.35 10.21 7.26 29.10 0.21 10.42 16 3 O -0.51 -20.72 16.77 -1.43 -0.02 -20.75 16 4 C -0.11 -3.36 5.17 29.10 0.15 -3.21 16 5 C -0.19 -8.44 4.40 -19.67 -0.09 -8.53 16 6 C -0.10 -5.03 9.65 22.22 0.21 -4.82 16 7 C -0.20 -11.10 8.70 22.73 0.20 -10.90 16 8 C 0.08 4.44 5.57 -21.29 -0.12 4.32 16 9 C -0.51 -29.48 9.05 23.46 0.21 -29.27 16 10 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 11 C 0.03 1.85 5.14 85.25 0.44 2.28 16 12 N -0.83 -45.69 10.97 21.83 0.24 -45.45 16 13 Si 0.98 40.52 29.59 68.60 2.03 42.55 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 17 C -0.25 -13.14 9.44 22.73 0.21 -12.92 16 18 C -0.06 -2.84 5.87 -19.92 -0.12 -2.96 16 19 C -0.10 -3.46 9.59 71.23 0.68 -2.78 16 20 H 0.11 1.14 8.00 -2.39 -0.02 1.12 16 21 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.11 2.79 8.05 -2.39 -0.02 2.77 16 24 H 0.12 2.84 6.12 -2.39 -0.01 2.83 16 25 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.10 5.72 6.18 -2.91 -0.02 5.70 16 27 H 0.29 14.19 8.30 -92.71 -0.77 13.43 16 28 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.32 6.00 -2.39 -0.01 2.30 16 31 H 0.06 2.00 8.08 -2.38 -0.02 1.98 16 Total: -1.00 -71.61 268.00 6.10 -65.51 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.12 Total: 19.01 kcal Atomic # 6 Polarization: -63.61 SS G_CDS: 2.74 Total: -60.87 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.24 Total: -45.45 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.02 Total: -20.75 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -71.61 6.10 -65.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307101709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.727 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds