Wall clock time and date at job start Mon Mar 30 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20760 * 120.00043 * 2 1 4 4 C 1.50703 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.50698 * 109.47334 * 180.02562 * 4 2 1 6 6 C 1.37643 * 120.12656 * 90.00374 * 5 4 2 7 7 C 1.50704 * 119.87313 * 359.97438 * 6 5 4 8 8 C 1.38608 * 120.24488 * 179.97438 * 6 5 4 9 9 C 1.38652 * 120.50445 * 0.02562 * 8 6 5 10 10 C 1.37591 * 120.25082 * 0.25449 * 9 8 6 11 11 C 1.40698 * 120.12966 * 269.98190 * 5 4 2 12 12 C 1.41397 * 120.24246 * 0.02562 * 11 5 4 13 13 H 1.08004 * 119.99943 * 25.28982 * 12 11 5 14 14 C 1.39947 * 119.99798 * 205.29461 * 12 11 5 15 15 N 1.30815 * 120.00321 * 15.10660 * 14 12 11 16 16 Si 1.86808 * 119.99652 * 195.10765 * 14 12 11 17 17 H 1.48494 * 109.46861 * 90.00132 * 16 14 12 18 18 H 1.48505 * 109.46444 * 209.99954 * 16 14 12 19 19 H 1.48494 * 109.47253 * 329.99649 * 16 14 12 20 20 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47316 * 300.00525 * 1 2 3 22 22 H 1.09006 * 109.47112 * 60.00076 * 1 2 3 23 23 H 1.09001 * 109.46873 * 60.00441 * 4 2 1 24 24 H 1.08997 * 109.47151 * 300.00718 * 4 2 1 25 25 H 1.08999 * 109.46803 * 269.97743 * 7 6 5 26 26 H 1.08994 * 109.46947 * 29.97835 * 7 6 5 27 27 H 1.08999 * 109.46572 * 149.97873 * 7 6 5 28 28 H 1.08008 * 119.74679 * 180.02562 * 8 6 5 29 29 H 1.08009 * 119.87307 * 179.97438 * 9 8 6 30 30 H 1.08006 * 120.13061 * 179.72733 * 10 9 8 31 31 H 0.96997 * 120.00295 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7421 -1.0298 0.0011 6 6 4.4209 -0.9034 1.1918 7 6 3.6794 -1.0403 2.4967 8 6 5.7837 -0.6507 1.1952 9 6 6.4785 -0.5219 0.0023 10 6 5.8195 -0.6387 -1.1999 11 6 4.4370 -0.9014 -1.2156 12 6 3.7502 -1.0293 -2.4449 13 1 2.6921 -0.8191 -2.4967 14 6 4.4415 -1.4282 -3.5944 15 7 5.6308 -1.9629 -3.4900 16 14 3.6659 -1.1971 -5.2781 17 1 4.0401 0.1352 -5.8167 18 1 4.1529 -2.2571 -6.1970 19 1 2.1884 -1.2857 -5.1589 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.9972 -1.8770 -0.8892 24 1 1.9971 -1.8763 0.8907 25 1 3.3137 -0.0628 2.8110 26 1 2.8365 -1.7189 2.3662 27 1 4.3520 -1.4382 3.2566 28 1 6.3084 -0.5534 2.1342 29 1 7.5404 -0.3246 0.0168 30 1 6.3619 -0.5336 -2.1280 31 1 6.1101 -2.2391 -4.2867 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307171899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:19 Heat of formation + Delta-G solvation = -34.330023 kcal Electronic energy + Delta-G solvation = -14554.483648 eV Core-core repulsion = 12186.097604 eV Total energy + Delta-G solvation = -2368.386043 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99616 -37.32963 -33.87757 -32.06385 -30.83842 -29.79031 -27.03603 -25.21671 -24.85585 -20.47313 -19.94982 -18.49348 -16.83025 -15.46897 -15.07084 -14.88194 -14.62336 -13.96102 -13.69916 -13.18540 -12.72094 -12.39326 -11.97969 -11.84434 -11.68892 -11.54184 -11.44238 -11.03343 -10.95705 -10.76512 -10.48697 -10.20684 -9.43215 -9.31021 -9.13442 -8.88340 -7.25750 -7.10747 -6.69361 -4.32534 2.73019 2.82394 3.00990 3.08441 3.10737 3.27702 3.94987 4.65211 4.85423 5.46215 5.64521 5.71348 5.80711 5.96358 5.98883 6.13751 6.21347 6.32130 6.47224 6.56107 6.57944 6.61794 6.89787 7.11138 7.33909 7.49346 7.69329 7.97245 8.10348 8.16996 8.31169 8.34789 8.68443 8.94194 9.04730 10.23802 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.012871 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.616154 B = 2174.941992 C = 3117.137255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.350 3.650 3 O -0.449 6.449 4 C -0.109 4.109 5 C -0.181 4.181 6 C -0.058 4.058 7 C -0.107 4.107 8 C -0.235 4.235 9 C -0.107 4.107 10 C -0.162 4.162 11 C 0.124 3.876 12 C -0.460 4.460 13 H 0.074 0.926 14 C 0.076 3.924 15 N -0.797 5.797 16 Si 0.905 3.095 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 H 0.076 0.924 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -0.597 3.492 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.224 3.776 3 O -0.321 6.321 4 C -0.146 4.146 5 C -0.183 4.183 6 C -0.058 4.058 7 C -0.164 4.164 8 C -0.254 4.254 9 C -0.125 4.125 10 C -0.182 4.182 11 C 0.122 3.878 12 C -0.490 4.490 13 H 0.092 0.908 14 C -0.141 4.141 15 N -0.422 5.422 16 Si 0.730 3.270 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.187 1.187 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.043 -0.154 3.342 6.907 hybrid contribution -0.256 -0.033 -0.864 0.902 sum -6.298 -0.187 2.478 6.771 Atomic orbital electron populations 1.22305 0.96267 1.03828 1.03770 1.24779 0.90678 0.91442 0.70675 1.90373 1.71847 1.35143 1.34773 1.20846 0.94577 0.96043 1.03164 1.19053 0.92776 1.13572 0.92880 1.19102 0.93687 0.99858 0.93147 1.20742 0.99388 1.00488 0.95746 1.20186 0.93780 1.15344 0.96138 1.20664 0.97348 1.01044 0.93452 1.21325 0.95445 1.04963 0.96442 1.17369 0.91866 0.87202 0.91375 1.19484 0.96395 1.40678 0.92453 0.90798 1.25876 0.94576 0.92466 1.01173 1.69813 1.12245 1.28795 1.31384 0.86369 0.80427 0.78887 0.81362 1.19354 1.20329 1.18695 0.90510 0.90033 0.89791 0.88145 0.89826 0.92860 0.92640 0.93095 0.89691 0.89584 0.86369 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 10.33 36.00 0.37 -2.35 16 2 C 0.35 6.61 7.23 -29.04 -0.21 6.40 16 3 O -0.45 -10.46 16.77 6.00 0.10 -10.36 16 4 C -0.11 -2.15 4.66 -29.03 -0.14 -2.29 16 5 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 6 C -0.06 -1.34 5.87 -104.70 -0.61 -1.95 16 7 C -0.11 -1.96 9.60 36.01 0.35 -1.61 16 8 C -0.24 -5.56 9.70 -39.29 -0.38 -5.95 16 9 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 10 C -0.16 -4.41 8.69 -38.88 -0.34 -4.74 16 11 C 0.12 3.36 5.57 -106.82 -0.60 2.77 16 12 C -0.46 -12.18 8.15 -37.74 -0.31 -12.49 16 13 H 0.07 1.88 6.82 -52.48 -0.36 1.52 16 14 C 0.08 1.93 5.19 -17.34 -0.09 1.84 16 15 N -0.80 -20.77 10.87 55.55 0.60 -20.17 16 16 Si 0.90 18.90 29.59 -169.99 -5.03 13.88 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.10 1.97 6.77 -51.93 -0.35 1.62 16 24 H 0.08 1.39 5.93 -51.93 -0.31 1.09 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.90 5.93 -51.93 -0.31 0.59 16 27 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.08 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.12 3.29 6.14 -52.48 -0.32 2.97 16 31 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 264.51 15.07 3.99 3.99 Total: -1.00 -30.02 264.51 -6.88 -36.90 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.73 Total: 4.05 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.81 Total: -28.28 kcal Atomic # 7 Polarization: -20.77 SS G_CDS: 0.60 Total: -20.17 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.10 Total: -10.36 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.02 -6.88 -36.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307171899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.575 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds