Wall clock time and date at job start Mon Mar 30 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20760 * 120.00043 * 2 1 4 4 C 1.50703 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.50698 * 109.47334 * 180.02562 * 4 2 1 6 6 C 1.37643 * 120.12656 * 90.00374 * 5 4 2 7 7 C 1.50704 * 119.87313 * 359.97438 * 6 5 4 8 8 C 1.38608 * 120.24488 * 179.97438 * 6 5 4 9 9 C 1.38652 * 120.50445 * 0.02562 * 8 6 5 10 10 C 1.37591 * 120.25082 * 0.25449 * 9 8 6 11 11 C 1.40698 * 120.12966 * 269.98190 * 5 4 2 12 12 C 1.41397 * 120.24246 * 0.02562 * 11 5 4 13 13 H 1.08004 * 119.99943 * 25.28982 * 12 11 5 14 14 C 1.39947 * 119.99798 * 205.29461 * 12 11 5 15 15 N 1.30815 * 120.00321 * 15.10660 * 14 12 11 16 16 Si 1.86808 * 119.99652 * 195.10765 * 14 12 11 17 17 H 1.48494 * 109.46861 * 90.00132 * 16 14 12 18 18 H 1.48505 * 109.46444 * 209.99954 * 16 14 12 19 19 H 1.48494 * 109.47253 * 329.99649 * 16 14 12 20 20 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47316 * 300.00525 * 1 2 3 22 22 H 1.09006 * 109.47112 * 60.00076 * 1 2 3 23 23 H 1.09001 * 109.46873 * 60.00441 * 4 2 1 24 24 H 1.08997 * 109.47151 * 300.00718 * 4 2 1 25 25 H 1.08999 * 109.46803 * 269.97743 * 7 6 5 26 26 H 1.08994 * 109.46947 * 29.97835 * 7 6 5 27 27 H 1.08999 * 109.46572 * 149.97873 * 7 6 5 28 28 H 1.08008 * 119.74679 * 180.02562 * 8 6 5 29 29 H 1.08009 * 119.87307 * 179.97438 * 9 8 6 30 30 H 1.08006 * 120.13061 * 179.72733 * 10 9 8 31 31 H 0.96997 * 120.00295 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7421 -1.0298 0.0011 6 6 4.4209 -0.9034 1.1918 7 6 3.6794 -1.0403 2.4967 8 6 5.7837 -0.6507 1.1952 9 6 6.4785 -0.5219 0.0023 10 6 5.8195 -0.6387 -1.1999 11 6 4.4370 -0.9014 -1.2156 12 6 3.7502 -1.0293 -2.4449 13 1 2.6921 -0.8191 -2.4967 14 6 4.4415 -1.4282 -3.5944 15 7 5.6308 -1.9629 -3.4900 16 14 3.6659 -1.1971 -5.2781 17 1 4.0401 0.1352 -5.8167 18 1 4.1529 -2.2571 -6.1970 19 1 2.1884 -1.2857 -5.1589 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.9972 -1.8770 -0.8892 24 1 1.9971 -1.8763 0.8907 25 1 3.3137 -0.0628 2.8110 26 1 2.8365 -1.7189 2.3662 27 1 4.3520 -1.4382 3.2566 28 1 6.3084 -0.5534 2.1342 29 1 7.5404 -0.3246 0.0168 30 1 6.3619 -0.5336 -2.1280 31 1 6.1101 -2.2391 -4.2867 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307171899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:19 Heat of formation + Delta-G solvation = -51.134000 kcal Electronic energy + Delta-G solvation = -14555.212323 eV Core-core repulsion = 12186.097604 eV Total energy + Delta-G solvation = -2369.114718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63384 -39.08677 -35.75113 -33.80006 -32.59884 -31.19383 -28.65463 -26.97520 -26.63777 -22.32279 -21.68116 -20.08541 -18.74645 -17.27909 -16.64091 -16.44629 -16.26906 -15.62759 -15.28245 -14.90239 -14.24480 -14.14941 -13.41317 -13.31737 -13.22469 -13.08532 -12.93932 -12.71193 -12.66112 -12.45395 -12.17119 -11.95431 -11.24652 -11.13407 -11.02304 -10.43274 -9.18297 -8.97415 -8.57526 -6.30514 1.00600 1.13012 1.27917 1.36254 1.48758 1.53109 2.19894 2.76522 3.43594 3.85780 4.21198 4.35702 4.43881 4.51779 4.63549 4.72525 4.77337 4.84144 4.86415 4.99867 5.09663 5.16967 5.23317 5.31684 5.39408 5.61856 5.82584 6.06758 6.20732 6.23276 6.43623 6.74081 6.88476 6.99195 7.12589 8.37789 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.012871 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.616154 B = 2174.941992 C = 3117.137255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.352 3.648 3 O -0.504 6.504 4 C -0.114 4.114 5 C -0.192 4.192 6 C -0.071 4.071 7 C -0.101 4.101 8 C -0.244 4.244 9 C -0.119 4.119 10 C -0.201 4.201 11 C 0.089 3.911 12 C -0.488 4.488 13 H 0.076 0.924 14 C 0.033 3.967 15 N -0.830 5.830 16 Si 0.975 3.025 17 H -0.271 1.271 18 H -0.267 1.267 19 H -0.251 1.251 20 H 0.107 0.893 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.119 0.881 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 -1.106 4.390 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.230 3.770 3 O -0.380 6.380 4 C -0.150 4.150 5 C -0.194 4.194 6 C -0.071 4.071 7 C -0.158 4.158 8 C -0.264 4.264 9 C -0.137 4.137 10 C -0.220 4.220 11 C 0.086 3.914 12 C -0.517 4.517 13 H 0.094 0.906 14 C -0.181 4.181 15 N -0.457 5.457 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.192 1.192 19 H -0.175 1.175 20 H 0.126 0.874 21 H 0.122 0.878 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.137 0.863 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.299 -0.684 4.260 9.353 hybrid contribution 0.487 0.105 -1.030 1.144 sum -7.812 -0.579 3.230 8.474 Atomic orbital electron populations 1.22263 0.91192 1.06406 1.05096 1.25331 0.93331 0.89884 0.68447 1.90369 1.73497 1.36572 1.37593 1.20988 0.91939 0.97368 1.04742 1.19611 0.95376 1.11991 0.92383 1.19724 0.93928 0.98340 0.95154 1.20761 1.00047 1.01571 0.93399 1.20611 0.94616 1.14530 0.96599 1.20931 0.98393 1.00916 0.93469 1.21320 0.96268 1.07909 0.96514 1.17819 0.92263 0.88164 0.93110 1.19699 0.96682 1.42011 0.93347 0.90595 1.26737 0.94977 0.91620 1.04782 1.69891 1.13598 1.29501 1.32671 0.85303 0.79989 0.78685 0.76382 1.19604 1.19153 1.17472 0.87419 0.87816 0.89055 0.88302 0.86289 0.92192 0.90382 0.91091 0.87053 0.87977 0.88521 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.39 10.33 71.23 0.74 -3.65 16 2 C 0.35 12.62 7.23 29.10 0.21 12.83 16 3 O -0.50 -23.32 16.77 -1.45 -0.02 -23.35 16 4 C -0.11 -4.27 4.66 29.10 0.14 -4.14 16 5 C -0.19 -9.31 4.43 -19.40 -0.09 -9.40 16 6 C -0.07 -3.22 5.87 -19.92 -0.12 -3.33 16 7 C -0.10 -3.38 9.60 71.24 0.68 -2.69 16 8 C -0.24 -11.44 9.70 22.46 0.22 -11.23 16 9 C -0.12 -6.05 10.02 22.22 0.22 -5.83 16 10 C -0.20 -11.41 8.69 22.73 0.20 -11.21 16 11 C 0.09 4.94 5.57 -21.29 -0.12 4.83 16 12 C -0.49 -26.52 8.15 23.46 0.19 -26.33 16 13 H 0.08 3.93 6.82 -2.91 -0.02 3.91 16 14 C 0.03 1.69 5.19 85.26 0.44 2.13 16 15 N -0.83 -44.89 10.87 21.83 0.24 -44.65 16 16 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 20 H 0.11 1.79 8.00 -2.39 -0.02 1.77 16 21 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.10 3.75 6.77 -2.39 -0.02 3.74 16 24 H 0.12 3.53 5.93 -2.39 -0.01 3.52 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.22 5.93 -2.39 -0.01 2.20 16 27 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 28 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 29 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.10 5.76 6.14 -2.91 -0.02 5.74 16 31 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -68.18 264.51 6.08 -62.09 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 1.13 Total: 22.77 kcal Atomic # 6 Polarization: -60.73 SS G_CDS: 2.72 Total: -58.02 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.24 Total: -44.65 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.02 Total: -23.35 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -68.18 6.08 -62.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307171899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.960 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds