Wall clock time and date at job start Mon Mar 30 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20761 * 119.99961 * 2 1 4 4 C 1.50700 * 120.00154 * 179.97438 * 2 1 3 5 5 C 1.50696 * 109.47669 * 180.02562 * 4 2 1 6 6 C 1.37643 * 120.12762 * 265.00540 * 5 4 2 7 7 C 1.38614 * 120.25017 * 179.97438 * 6 5 4 8 8 C 1.38661 * 120.49725 * 359.97438 * 7 6 5 9 9 C 1.37596 * 120.25175 * 0.25677 * 8 7 6 10 10 C 1.50695 * 120.12973 * 179.72514 * 9 8 7 11 11 C 1.40691 * 120.12679 * 84.97565 * 5 4 2 12 12 C 1.41396 * 120.24642 * 0.02956 * 11 5 4 13 13 H 1.08000 * 119.99844 * 47.70982 * 12 11 5 14 14 C 1.39948 * 119.99960 * 227.71093 * 12 11 5 15 15 N 1.30823 * 119.99946 * 19.66113 * 14 12 11 16 16 Si 1.86805 * 119.99800 * 199.65518 * 14 12 11 17 17 H 1.48498 * 109.46649 * 90.00349 * 16 14 12 18 18 H 1.48503 * 109.46838 * 210.00178 * 16 14 12 19 19 H 1.48502 * 109.47073 * 330.00488 * 16 14 12 20 20 H 1.08998 * 109.46877 * 239.99731 * 1 2 3 21 21 H 1.08992 * 109.46820 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46815 * 120.00134 * 1 2 3 23 23 H 1.09003 * 109.47171 * 60.00062 * 4 2 1 24 24 H 1.09001 * 109.47576 * 300.00365 * 4 2 1 25 25 H 1.07997 * 119.87504 * 359.97233 * 6 5 4 26 26 H 1.07993 * 119.75248 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.87412 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46902 * 90.88332 * 10 9 8 29 29 H 1.08998 * 109.47151 * 210.87907 * 10 9 8 30 30 H 1.08997 * 109.47023 * 330.88404 * 10 9 8 31 31 H 0.96995 * 119.99708 * 184.75009 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7422 -1.0298 0.0011 6 6 4.4408 -1.0058 -1.1846 7 6 5.8036 -0.7523 -1.1871 8 6 6.4783 -0.5199 0.0017 9 6 5.8011 -0.5437 1.1993 10 6 6.5383 -0.2968 2.4902 11 6 4.4165 -0.7958 1.2135 12 6 3.7093 -0.8180 2.4377 13 1 3.0326 -1.6310 2.6557 14 6 3.8861 0.2136 3.3667 15 7 4.3773 1.3634 2.9819 16 14 3.4205 -0.0513 5.1563 17 1 4.5910 -0.5846 5.8985 18 1 3.0016 1.2413 5.7553 19 1 2.2990 -1.0213 5.2377 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9973 -1.8771 -0.8892 24 1 1.9973 -1.8764 0.8908 25 1 3.9253 -1.1851 -2.1165 26 1 6.3439 -0.7358 -2.1220 27 1 7.5403 -0.3238 -0.0119 28 1 6.5154 0.7676 2.7238 29 1 6.0598 -0.8556 3.2945 30 1 7.5728 -0.6238 2.3861 31 1 4.5643 2.0543 3.6364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307307567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:17 Heat of formation + Delta-G solvation = -30.234537 kcal Electronic energy + Delta-G solvation = -14742.038540 eV Core-core repulsion = 12373.830091 eV Total energy + Delta-G solvation = -2368.208450 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78229 -37.38885 -33.62114 -32.18155 -30.34010 -29.70612 -27.09246 -25.48998 -24.40289 -20.45982 -19.81074 -18.35477 -17.02208 -15.26775 -14.85998 -14.64220 -14.58647 -14.04512 -13.65521 -13.05729 -12.51567 -12.17183 -11.87018 -11.80850 -11.53567 -11.43463 -11.19091 -11.07611 -10.84802 -10.54093 -10.38238 -10.32029 -9.59089 -9.34276 -8.74192 -8.67379 -7.22785 -6.96603 -6.49901 -4.29554 2.84713 2.93763 2.96220 3.17398 3.18524 3.23213 4.09614 4.76733 4.96811 5.50740 5.63024 5.76009 5.87875 6.05788 6.11016 6.25708 6.36740 6.46491 6.57682 6.62353 6.86236 6.95779 7.09296 7.25146 7.31103 7.43489 7.77868 7.91445 7.93523 8.15319 8.33914 8.52591 8.65527 9.00712 9.06212 10.46675 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.016010 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.304981 B = 1748.481156 C = 2749.171962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.347 3.653 3 O -0.429 6.429 4 C -0.102 4.102 5 C -0.154 4.154 6 C -0.102 4.102 7 C -0.215 4.215 8 C -0.108 4.108 9 C -0.127 4.127 10 C -0.084 4.084 11 C 0.139 3.861 12 C -0.491 4.491 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.792 5.792 16 Si 0.884 3.116 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.265 1.265 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -3.988 -2.027 5.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.220 3.780 3 O -0.300 6.300 4 C -0.139 4.139 5 C -0.155 4.155 6 C -0.120 4.120 7 C -0.235 4.235 8 C -0.126 4.126 9 C -0.128 4.128 10 C -0.141 4.141 11 C 0.137 3.863 12 C -0.522 4.522 13 H 0.092 0.908 14 C -0.128 4.128 15 N -0.418 5.418 16 Si 0.709 3.291 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.189 1.189 20 H 0.103 0.897 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.574 -3.152 -1.955 5.150 hybrid contribution -0.248 -0.024 0.861 0.896 sum -3.822 -3.175 -1.094 5.088 Atomic orbital electron populations 1.22338 0.96449 1.03765 1.03445 1.24478 0.90466 0.91243 0.71801 1.90441 1.71626 1.34718 1.33195 1.20719 0.94243 0.96474 1.02475 1.19502 0.92543 1.10054 0.93368 1.20402 0.94173 1.01671 0.95777 1.20390 0.94626 1.12140 0.96297 1.20545 0.97596 1.01474 0.92969 1.19947 0.93963 1.05464 0.93448 1.20589 0.95551 1.01776 0.96155 1.17171 0.90321 0.87123 0.91698 1.19126 1.25139 1.07006 1.00881 0.90765 1.25520 0.94144 0.93892 0.99276 1.69912 1.34123 1.02604 1.35197 0.86717 0.79759 0.78429 0.84226 1.19508 1.20715 1.18942 0.89720 0.91006 0.90131 0.90624 0.88565 0.89494 0.89294 0.89332 0.91596 0.92398 0.95866 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.93 10.26 36.01 0.37 -2.56 16 2 C 0.35 7.01 7.26 -29.03 -0.21 6.80 16 3 O -0.43 -10.92 16.76 6.00 0.10 -10.82 16 4 C -0.10 -2.00 5.30 -29.04 -0.15 -2.16 16 5 C -0.15 -3.69 4.43 -103.92 -0.46 -4.15 16 6 C -0.10 -2.33 9.66 -39.66 -0.38 -2.72 16 7 C -0.22 -4.93 10.05 -39.29 -0.39 -5.32 16 8 C -0.11 -2.57 9.68 -39.66 -0.38 -2.95 16 9 C -0.13 -3.27 5.59 -103.91 -0.58 -3.85 16 10 C -0.08 -2.01 8.30 36.00 0.30 -1.71 16 11 C 0.14 3.65 5.20 -106.82 -0.56 3.09 16 12 C -0.49 -12.77 7.27 -37.74 -0.27 -13.04 16 13 H 0.07 1.85 7.11 -52.49 -0.37 1.48 16 14 C 0.09 2.24 3.53 -17.34 -0.06 2.18 16 15 N -0.79 -21.43 10.87 55.55 0.60 -20.83 16 16 Si 0.88 19.16 29.61 -169.99 -5.03 14.13 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 24 H 0.10 1.83 6.82 -51.93 -0.35 1.47 16 25 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 26 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 28 H 0.07 1.64 6.64 -51.93 -0.34 1.29 16 29 H 0.06 1.39 6.49 -51.93 -0.34 1.05 16 30 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.27 6.90 8.30 -40.82 -0.34 6.57 16 LS Contribution 265.15 15.07 4.00 4.00 Total: -1.00 -30.49 265.15 -7.04 -37.53 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.92 Total: 2.38 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.79 Total: -26.39 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: 0.60 Total: -20.83 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.10 Total: -10.82 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.49 -7.04 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307307567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.297 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds