Wall clock time and date at job start Mon Mar 30 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20761 * 119.99961 * 2 1 4 4 C 1.50700 * 120.00154 * 179.97438 * 2 1 3 5 5 C 1.50696 * 109.47669 * 180.02562 * 4 2 1 6 6 C 1.37643 * 120.12762 * 265.00540 * 5 4 2 7 7 C 1.38614 * 120.25017 * 179.97438 * 6 5 4 8 8 C 1.38661 * 120.49725 * 359.97438 * 7 6 5 9 9 C 1.37596 * 120.25175 * 0.25677 * 8 7 6 10 10 C 1.50695 * 120.12973 * 179.72514 * 9 8 7 11 11 C 1.40691 * 120.12679 * 84.97565 * 5 4 2 12 12 C 1.41396 * 120.24642 * 0.02956 * 11 5 4 13 13 H 1.08000 * 119.99844 * 47.70982 * 12 11 5 14 14 C 1.39948 * 119.99960 * 227.71093 * 12 11 5 15 15 N 1.30823 * 119.99946 * 19.66113 * 14 12 11 16 16 Si 1.86805 * 119.99800 * 199.65518 * 14 12 11 17 17 H 1.48498 * 109.46649 * 90.00349 * 16 14 12 18 18 H 1.48503 * 109.46838 * 210.00178 * 16 14 12 19 19 H 1.48502 * 109.47073 * 330.00488 * 16 14 12 20 20 H 1.08998 * 109.46877 * 239.99731 * 1 2 3 21 21 H 1.08992 * 109.46820 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46815 * 120.00134 * 1 2 3 23 23 H 1.09003 * 109.47171 * 60.00062 * 4 2 1 24 24 H 1.09001 * 109.47576 * 300.00365 * 4 2 1 25 25 H 1.07997 * 119.87504 * 359.97233 * 6 5 4 26 26 H 1.07993 * 119.75248 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.87412 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46902 * 90.88332 * 10 9 8 29 29 H 1.08998 * 109.47151 * 210.87907 * 10 9 8 30 30 H 1.08997 * 109.47023 * 330.88404 * 10 9 8 31 31 H 0.96995 * 119.99708 * 184.75009 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7422 -1.0298 0.0011 6 6 4.4408 -1.0058 -1.1846 7 6 5.8036 -0.7523 -1.1871 8 6 6.4783 -0.5199 0.0017 9 6 5.8011 -0.5437 1.1993 10 6 6.5383 -0.2968 2.4902 11 6 4.4165 -0.7958 1.2135 12 6 3.7093 -0.8180 2.4377 13 1 3.0326 -1.6310 2.6557 14 6 3.8861 0.2136 3.3667 15 7 4.3773 1.3634 2.9819 16 14 3.4205 -0.0513 5.1563 17 1 4.5910 -0.5846 5.8985 18 1 3.0016 1.2413 5.7553 19 1 2.2990 -1.0213 5.2377 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9973 -1.8771 -0.8892 24 1 1.9973 -1.8764 0.8908 25 1 3.9253 -1.1851 -2.1165 26 1 6.3439 -0.7358 -2.1220 27 1 7.5403 -0.3238 -0.0119 28 1 6.5154 0.7676 2.7238 29 1 6.0598 -0.8556 3.2945 30 1 7.5728 -0.6238 2.3861 31 1 4.5643 2.0543 3.6364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307307567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:17 Heat of formation + Delta-G solvation = -47.288451 kcal Electronic energy + Delta-G solvation = -14742.778053 eV Core-core repulsion = 12373.830091 eV Total energy + Delta-G solvation = -2368.947963 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47990 -39.15905 -35.49883 -33.92527 -32.14525 -31.20125 -28.80819 -27.20806 -26.27562 -22.28659 -21.54565 -19.98382 -18.90804 -17.08806 -16.41423 -16.32553 -16.27606 -15.73611 -15.33465 -14.77326 -14.34532 -14.01580 -13.34445 -13.28684 -13.12296 -13.00825 -12.96165 -12.76489 -12.59693 -12.24268 -12.16627 -12.11792 -11.37754 -11.15085 -10.57525 -10.35829 -9.04282 -8.85729 -8.38904 -6.24947 1.02549 1.11501 1.40038 1.42046 1.48164 1.49297 2.29426 2.90221 3.40103 3.80196 4.26241 4.37147 4.44565 4.57109 4.64574 4.75566 4.80195 4.86110 4.91889 5.06456 5.12838 5.19198 5.35859 5.36377 5.47510 5.58219 5.95052 6.08123 6.10613 6.24371 6.50071 6.76270 7.01488 7.11472 7.15941 8.59006 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.016010 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.304981 B = 1748.481156 C = 2749.171962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.346 3.654 3 O -0.496 6.496 4 C -0.106 4.106 5 C -0.165 4.165 6 C -0.116 4.116 7 C -0.217 4.217 8 C -0.124 4.124 9 C -0.158 4.158 10 C -0.074 4.074 11 C 0.102 3.898 12 C -0.507 4.507 13 H 0.076 0.924 14 C 0.051 3.949 15 N -0.833 5.833 16 Si 0.946 3.054 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.255 1.255 20 H 0.105 0.895 21 H 0.068 0.932 22 H 0.120 0.880 23 H 0.117 0.883 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 -5.238 -2.619 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.223 3.777 3 O -0.371 6.371 4 C -0.143 4.143 5 C -0.166 4.166 6 C -0.134 4.134 7 C -0.236 4.236 8 C -0.143 4.143 9 C -0.160 4.160 10 C -0.130 4.130 11 C 0.101 3.899 12 C -0.538 4.538 13 H 0.094 0.906 14 C -0.162 4.162 15 N -0.462 5.462 16 Si 0.768 3.232 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.178 1.178 20 H 0.123 0.877 21 H 0.087 0.913 22 H 0.139 0.861 23 H 0.135 0.865 24 H 0.120 0.880 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.797 -4.441 -2.554 7.018 hybrid contribution 0.146 0.306 0.897 0.959 sum -4.651 -4.135 -1.656 6.440 Atomic orbital electron populations 1.22290 0.91662 1.04606 1.06266 1.25236 0.93148 0.90164 0.69128 1.90436 1.73428 1.36624 1.36652 1.20875 0.91734 0.97095 1.04632 1.20050 0.94995 1.08511 0.93068 1.20836 0.94527 1.01266 0.96784 1.20840 0.95112 1.10478 0.97147 1.20859 0.98779 1.01650 0.92969 1.20317 0.94538 1.06445 0.94665 1.20459 0.96614 1.00539 0.95424 1.17596 0.90994 0.88422 0.92935 1.19291 1.25696 1.07208 1.01652 0.90603 1.26195 0.93841 0.93256 1.02869 1.70004 1.36229 1.03544 1.36407 0.85756 0.79813 0.78268 0.79324 1.18931 1.20872 1.17812 0.87681 0.91282 0.86125 0.86529 0.88038 0.86437 0.86381 0.87433 0.93216 0.93411 0.93616 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.93 10.26 71.24 0.73 -4.20 16 2 C 0.35 13.46 7.26 29.10 0.21 13.67 16 3 O -0.50 -25.50 16.76 -1.45 -0.02 -25.53 16 4 C -0.11 -3.98 5.30 29.10 0.15 -3.82 16 5 C -0.17 -7.82 4.43 -19.41 -0.09 -7.91 16 6 C -0.12 -5.12 9.66 22.22 0.21 -4.91 16 7 C -0.22 -9.60 10.05 22.46 0.23 -9.38 16 8 C -0.12 -5.90 9.68 22.22 0.21 -5.68 16 9 C -0.16 -8.25 5.59 -19.41 -0.11 -8.36 16 10 C -0.07 -3.58 8.30 71.23 0.59 -2.99 16 11 C 0.10 5.43 5.20 -21.29 -0.11 5.32 16 12 C -0.51 -26.68 7.27 23.46 0.17 -26.51 16 13 H 0.08 3.80 7.11 -2.91 -0.02 3.78 16 14 C 0.05 2.62 3.53 85.26 0.30 2.92 16 15 N -0.83 -46.44 10.87 21.83 0.24 -46.21 16 16 Si 0.95 39.61 29.61 68.60 2.03 41.64 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 20 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 22 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.12 3.33 8.05 -2.39 -0.02 3.31 16 24 H 0.10 3.68 6.82 -2.39 -0.02 3.67 16 25 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 26 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.05 2.55 6.64 -2.39 -0.02 2.53 16 29 H 0.05 2.34 6.49 -2.39 -0.02 2.33 16 30 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 31 H 0.27 14.32 8.30 -92.71 -0.77 13.55 16 Total: -1.00 -67.77 265.15 5.87 -61.90 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.12 Total: 20.04 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 2.51 Total: -51.84 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.24 Total: -46.21 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.02 Total: -25.53 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -67.77 5.87 -61.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307307567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.610 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds