Wall clock time and date at job start Mon Mar 30 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20761 * 119.99981 * 2 1 4 4 C 1.50697 * 120.00323 * 180.02562 * 2 1 3 5 5 C 1.50699 * 109.47547 * 179.97438 * 4 2 1 6 6 C 1.38660 * 119.87438 * 265.00138 * 5 4 2 7 7 C 1.38611 * 120.50026 * 180.02562 * 6 5 4 8 8 C 1.37637 * 120.25063 * 359.97438 * 7 6 5 9 9 C 1.40707 * 119.74304 * 0.02562 * 8 7 6 10 10 C 1.41392 * 120.24556 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00131 * 153.83118 * 10 9 8 12 12 C 1.39946 * 119.99854 * 333.82945 * 10 9 8 13 13 N 1.30822 * 120.00388 * 343.85040 * 12 10 9 14 14 Si 1.86803 * 120.00029 * 163.84943 * 12 10 9 15 15 H 1.48504 * 109.47032 * 94.96428 * 14 12 10 16 16 H 1.48503 * 109.47216 * 214.96405 * 14 12 10 17 17 H 1.48504 * 109.47048 * 334.96523 * 14 12 10 18 18 C 1.37590 * 119.87602 * 84.99726 * 5 4 2 19 19 C 1.50700 * 120.13022 * 359.97438 * 18 5 4 20 20 H 1.09003 * 109.47053 * 240.00204 * 1 2 3 21 21 H 1.09003 * 109.46848 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47506 * 119.99736 * 1 2 3 23 23 H 1.09001 * 109.46940 * 59.99278 * 4 2 1 24 24 H 1.08995 * 109.47001 * 299.99696 * 4 2 1 25 25 H 1.07999 * 119.75063 * 0.27212 * 6 5 4 26 26 H 1.08005 * 119.87718 * 180.02562 * 7 6 5 27 27 H 1.08003 * 120.13330 * 179.97438 * 8 7 6 28 28 H 0.96997 * 120.00874 * 180.02562 * 13 12 10 29 29 H 1.08999 * 109.47264 * 270.00610 * 19 18 5 30 30 H 1.08999 * 109.46771 * 29.99723 * 19 18 5 31 31 H 1.08997 * 109.47485 * 150.00054 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7422 -1.0297 -0.0011 6 6 4.4399 -1.0062 -1.1991 7 6 5.8029 -0.7548 -1.2146 8 6 6.4790 -0.5248 -0.0380 9 6 5.7813 -0.5462 1.1837 10 6 6.4651 -0.3108 2.3986 11 1 5.9325 0.0868 3.2498 12 6 7.8322 -0.5931 2.4981 13 7 8.4098 -1.3539 1.6043 14 14 8.8323 0.1164 3.9073 15 1 8.9079 -0.8760 5.0095 16 1 10.2029 0.4330 3.4314 17 1 8.1811 1.3563 4.4014 18 6 4.3974 -0.8024 1.1872 19 6 3.6364 -0.8279 2.4877 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 1.9971 -1.8763 -0.8908 24 1 1.9973 -1.8769 0.8891 25 1 3.9166 -1.1813 -2.1276 26 1 6.3363 -0.7385 -2.1536 27 1 7.5411 -0.3295 -0.0523 28 1 9.3573 -1.5499 1.6734 29 1 3.2661 0.1725 2.7116 30 1 2.7953 -1.5160 2.4029 31 1 4.2971 -1.1586 3.2890 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307382165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:20 Heat of formation + Delta-G solvation = -34.497135 kcal Electronic energy + Delta-G solvation = -14336.130481 eV Core-core repulsion = 11967.737191 eV Total energy + Delta-G solvation = -2368.393290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19182 -37.44612 -33.82292 -32.01425 -31.04893 -29.82431 -27.01686 -25.43462 -24.65259 -20.63811 -19.75886 -18.77616 -16.87168 -15.41945 -15.30746 -15.06860 -14.62055 -14.14435 -13.77304 -13.24225 -12.60777 -12.28706 -12.09231 -12.06462 -11.59548 -11.52255 -11.36504 -11.12558 -10.95863 -10.67864 -10.51703 -10.23669 -9.49328 -9.26464 -9.18796 -9.03168 -7.22176 -7.13280 -6.67037 -4.27520 2.45058 2.84002 2.99223 3.10779 3.15887 3.26985 3.98797 4.51047 4.77288 5.26952 5.44367 5.51169 5.70673 5.77722 5.80252 6.07555 6.29826 6.35503 6.40427 6.54307 6.73555 6.77230 7.02774 7.16865 7.33607 7.48771 7.71673 7.97768 8.02322 8.13605 8.16042 8.36556 8.70956 8.97721 9.06574 10.27429 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041822 B = 0.008363 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.340531 B = 3347.096465 C = 3750.827499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.348 3.652 3 O -0.440 6.440 4 C -0.126 4.126 5 C -0.058 4.058 6 C -0.225 4.225 7 C -0.111 4.111 8 C -0.159 4.159 9 C 0.113 3.887 10 C -0.461 4.461 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.799 5.799 14 Si 0.904 3.096 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.178 4.178 19 C -0.088 4.088 20 H 0.087 0.913 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.278 0.722 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 -0.999 -0.670 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.222 3.778 3 O -0.312 6.312 4 C -0.163 4.163 5 C -0.058 4.058 6 C -0.244 4.244 7 C -0.129 4.129 8 C -0.178 4.178 9 C 0.111 3.889 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.141 4.141 13 N -0.425 5.425 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.179 4.179 19 C -0.144 4.144 20 H 0.106 0.894 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.411 -0.539 -0.716 8.459 hybrid contribution 0.517 0.088 0.488 0.716 sum -7.895 -0.451 -0.228 7.911 Atomic orbital electron populations 1.22347 0.95543 1.04246 1.03969 1.24622 0.90997 0.90951 0.71258 1.90430 1.71892 1.34889 1.34003 1.21082 0.94998 0.96703 1.03565 1.18664 0.91474 1.01967 0.93718 1.20140 0.94548 1.14649 0.95087 1.20615 0.93987 1.01433 0.96886 1.21300 0.99911 1.05287 0.91312 1.17422 0.90122 0.88214 0.93145 1.19537 0.93148 1.38235 0.98200 0.90384 1.25884 0.98317 0.92881 0.97019 1.69822 1.12512 1.26704 1.33444 0.86365 0.79091 0.80418 0.81225 1.19671 1.20123 1.18497 1.19504 0.95000 1.10633 0.92769 1.20466 0.98126 0.99112 0.96733 0.89448 0.90590 0.89535 0.89213 0.88479 0.89873 0.89572 0.86581 0.91076 0.94052 0.94377 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 10.26 36.00 0.37 -1.87 16 2 C 0.35 5.76 7.25 -29.04 -0.21 5.55 16 3 O -0.44 -9.46 16.76 6.00 0.10 -9.36 16 4 C -0.13 -2.14 5.26 -29.04 -0.15 -2.29 16 5 C -0.06 -1.32 4.37 -104.70 -0.46 -1.78 16 6 C -0.22 -5.25 9.68 -39.29 -0.38 -5.64 16 7 C -0.11 -2.75 10.02 -39.66 -0.40 -3.14 16 8 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 9 C 0.11 3.12 5.56 -106.82 -0.59 2.52 16 10 C -0.46 -12.51 8.12 -37.74 -0.31 -12.82 16 11 H 0.08 2.04 6.89 -52.49 -0.36 1.68 16 12 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 13 N -0.80 -21.17 10.97 55.55 0.61 -20.56 16 14 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 C -0.18 -4.42 5.94 -103.92 -0.62 -5.04 16 19 C -0.09 -1.87 8.99 36.01 0.32 -1.55 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.08 0.84 8.12 -51.93 -0.42 0.41 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 24 H 0.10 1.47 6.15 -51.93 -0.32 1.15 16 25 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 27 H 0.12 3.24 6.22 -52.48 -0.33 2.91 16 28 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.68 6.01 -51.93 -0.31 0.37 16 31 H 0.06 1.34 6.78 -51.93 -0.35 0.99 16 LS Contribution 265.00 15.07 3.99 3.99 Total: -1.00 -30.70 265.00 -6.94 -37.63 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.76 Total: 3.00 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -2.85 Total: -28.86 kcal Atomic # 7 Polarization: -21.17 SS G_CDS: 0.61 Total: -20.56 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.10 Total: -9.36 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.70 -6.94 -37.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307382165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.135 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds