Wall clock time and date at job start Mon Mar 30 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20761 * 119.99981 * 2 1 4 4 C 1.50697 * 120.00323 * 180.02562 * 2 1 3 5 5 C 1.50699 * 109.47547 * 179.97438 * 4 2 1 6 6 C 1.38660 * 119.87438 * 265.00138 * 5 4 2 7 7 C 1.38611 * 120.50026 * 180.02562 * 6 5 4 8 8 C 1.37637 * 120.25063 * 359.97438 * 7 6 5 9 9 C 1.40707 * 119.74304 * 0.02562 * 8 7 6 10 10 C 1.41392 * 120.24556 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00131 * 153.83118 * 10 9 8 12 12 C 1.39946 * 119.99854 * 333.82945 * 10 9 8 13 13 N 1.30822 * 120.00388 * 343.85040 * 12 10 9 14 14 Si 1.86803 * 120.00029 * 163.84943 * 12 10 9 15 15 H 1.48504 * 109.47032 * 94.96428 * 14 12 10 16 16 H 1.48503 * 109.47216 * 214.96405 * 14 12 10 17 17 H 1.48504 * 109.47048 * 334.96523 * 14 12 10 18 18 C 1.37590 * 119.87602 * 84.99726 * 5 4 2 19 19 C 1.50700 * 120.13022 * 359.97438 * 18 5 4 20 20 H 1.09003 * 109.47053 * 240.00204 * 1 2 3 21 21 H 1.09003 * 109.46848 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47506 * 119.99736 * 1 2 3 23 23 H 1.09001 * 109.46940 * 59.99278 * 4 2 1 24 24 H 1.08995 * 109.47001 * 299.99696 * 4 2 1 25 25 H 1.07999 * 119.75063 * 0.27212 * 6 5 4 26 26 H 1.08005 * 119.87718 * 180.02562 * 7 6 5 27 27 H 1.08003 * 120.13330 * 179.97438 * 8 7 6 28 28 H 0.96997 * 120.00874 * 180.02562 * 13 12 10 29 29 H 1.08999 * 109.47264 * 270.00610 * 19 18 5 30 30 H 1.08999 * 109.46771 * 29.99723 * 19 18 5 31 31 H 1.08997 * 109.47485 * 150.00054 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7422 -1.0297 -0.0011 6 6 4.4399 -1.0062 -1.1991 7 6 5.8029 -0.7548 -1.2146 8 6 6.4790 -0.5248 -0.0380 9 6 5.7813 -0.5462 1.1837 10 6 6.4651 -0.3108 2.3986 11 1 5.9325 0.0868 3.2498 12 6 7.8322 -0.5931 2.4981 13 7 8.4098 -1.3539 1.6043 14 14 8.8323 0.1164 3.9073 15 1 8.9079 -0.8760 5.0095 16 1 10.2029 0.4330 3.4314 17 1 8.1811 1.3563 4.4014 18 6 4.3974 -0.8024 1.1872 19 6 3.6364 -0.8279 2.4877 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 1.9971 -1.8763 -0.8908 24 1 1.9973 -1.8769 0.8891 25 1 3.9166 -1.1813 -2.1276 26 1 6.3363 -0.7385 -2.1536 27 1 7.5411 -0.3295 -0.0523 28 1 9.3573 -1.5499 1.6734 29 1 3.2661 0.1725 2.7116 30 1 2.7953 -1.5160 2.4029 31 1 4.2971 -1.1586 3.2890 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307382165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:20 Heat of formation + Delta-G solvation = -52.186580 kcal Electronic energy + Delta-G solvation = -14336.897553 eV Core-core repulsion = 11967.737191 eV Total energy + Delta-G solvation = -2369.160362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67780 -39.19142 -35.70767 -33.74653 -32.77202 -31.11939 -28.67938 -27.13521 -26.52446 -22.45738 -21.47167 -20.28384 -18.76572 -17.23382 -16.61902 -16.57069 -16.17602 -15.81312 -15.36016 -14.95383 -14.32315 -13.99526 -13.40938 -13.31379 -13.13563 -13.07056 -12.90350 -12.86782 -12.67330 -12.36008 -12.23863 -12.03855 -11.28460 -11.13908 -11.02448 -10.50505 -9.18491 -9.00123 -8.58956 -6.30125 1.00417 1.10224 1.21387 1.35758 1.47872 1.52896 2.20592 2.73711 3.40691 3.79088 4.06780 4.33900 4.38267 4.57353 4.60470 4.72135 4.81046 4.83513 4.85541 4.97238 5.07300 5.16572 5.28050 5.31720 5.39904 5.59479 5.82455 6.05647 6.20440 6.21113 6.43093 6.74153 6.80886 6.99063 7.11057 8.37601 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041822 B = 0.008363 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.340531 B = 3347.096465 C = 3750.827499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.351 3.649 3 O -0.503 6.503 4 C -0.130 4.130 5 C -0.061 4.061 6 C -0.232 4.232 7 C -0.122 4.122 8 C -0.195 4.195 9 C 0.077 3.923 10 C -0.495 4.495 11 H 0.075 0.925 12 C 0.033 3.967 13 N -0.832 5.832 14 Si 0.978 3.022 15 H -0.259 1.259 16 H -0.268 1.268 17 H -0.262 1.262 18 C -0.200 4.200 19 C -0.080 4.080 20 H 0.116 0.884 21 H 0.073 0.927 22 H 0.118 0.882 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.285 0.715 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -1.739 -0.481 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.230 3.770 3 O -0.380 6.380 4 C -0.166 4.166 5 C -0.061 4.061 6 C -0.251 4.251 7 C -0.140 4.140 8 C -0.214 4.214 9 C 0.075 3.925 10 C -0.525 4.525 11 H 0.093 0.907 12 C -0.181 4.181 13 N -0.459 5.459 14 Si 0.799 3.201 15 H -0.184 1.184 16 H -0.192 1.192 17 H -0.186 1.186 18 C -0.201 4.201 19 C -0.136 4.136 20 H 0.135 0.865 21 H 0.093 0.907 22 H 0.137 0.863 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.749 -1.305 -0.538 10.841 hybrid contribution 1.134 0.259 0.318 1.206 sum -9.614 -1.046 -0.220 9.674 Atomic orbital electron populations 1.22313 0.90542 1.05192 1.06804 1.25262 0.93572 0.89461 0.68741 1.90441 1.73575 1.36658 1.37317 1.21265 0.90839 0.98048 1.06463 1.19283 0.94908 0.99408 0.92547 1.20606 0.94085 1.13471 0.96900 1.20917 0.95211 1.01048 0.96842 1.21265 0.99317 1.08202 0.92638 1.17877 0.91985 0.89237 0.93440 1.19755 0.94494 1.39904 0.98345 0.90652 1.26744 0.98913 0.92645 0.99771 1.69890 1.13124 1.27588 1.35260 0.85258 0.77394 0.79529 0.77912 1.18379 1.19211 1.18578 1.20014 0.94526 1.10311 0.95267 1.20418 0.98662 0.99890 0.94656 0.86549 0.90747 0.86330 0.85744 0.86021 0.86786 0.87803 0.88708 0.90429 0.94227 0.90661 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 10.26 71.24 0.73 -2.56 16 2 C 0.35 10.51 7.25 29.10 0.21 10.72 16 3 O -0.50 -21.15 16.76 -1.45 -0.02 -21.17 16 4 C -0.13 -3.89 5.26 29.10 0.15 -3.73 16 5 C -0.06 -2.70 4.37 -19.92 -0.09 -2.79 16 6 C -0.23 -10.58 9.68 22.46 0.22 -10.37 16 7 C -0.12 -6.16 10.02 22.22 0.22 -5.93 16 8 C -0.19 -11.11 8.69 22.73 0.20 -10.91 16 9 C 0.08 4.39 5.56 -21.29 -0.12 4.27 16 10 C -0.50 -27.97 8.12 23.46 0.19 -27.78 16 11 H 0.08 4.11 6.89 -2.91 -0.02 4.09 16 12 C 0.03 1.74 5.16 85.26 0.44 2.18 16 13 N -0.83 -45.81 10.97 21.83 0.24 -45.57 16 14 Si 0.98 40.20 29.59 68.60 2.03 42.23 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 16 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 C -0.20 -10.00 5.94 -19.41 -0.12 -10.11 16 19 C -0.08 -3.35 8.99 71.24 0.64 -2.71 16 20 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 22 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 23 H 0.12 2.91 8.05 -2.39 -0.02 2.89 16 24 H 0.12 3.07 6.15 -2.39 -0.01 3.06 16 25 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 26 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 27 H 0.09 5.66 6.22 -2.91 -0.02 5.64 16 28 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.50 6.01 -2.39 -0.01 2.49 16 31 H 0.05 2.16 6.78 -2.39 -0.02 2.15 16 Total: -1.00 -70.94 265.00 6.05 -64.89 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.12 Total: 19.35 kcal Atomic # 6 Polarization: -62.41 SS G_CDS: 2.68 Total: -59.73 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.24 Total: -45.57 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.02 Total: -21.17 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -70.94 6.05 -64.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307382165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.700 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds